DreINT0172702 @ danRer10
Intron Retention
Gene
ENSDARG00000016163 | usp33
Description
ubiquitin specific peptidase 33 [Source:ZFIN;Acc:ZDB-GENE-040426-2323]
Coordinates
chr2:8963143-8963419:+
Coord C1 exon
chr2:8963143-8963224
Coord A exon
chr2:8963225-8963310
Coord C2 exon
chr2:8963311-8963419
Length
86 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GTTGGCTCACTGTTGTTTAGGTA
3' ss Score
5.83
Exon sequences
Seq C1 exon
GTATTCCGCCGAATAAGGCCGCATACATTGATGACCTTGTTTTGATGATTCCCCAAAACGTGTGGGACCATCTCTATAGCAG
Seq A exon
GTAAGAGTTGTCACTTCTCTTTTCCTGGCTTCCTGTGCGAGTTCAGGTTTTTATTAAATGCTGATTGTTGGCTCACTGTTGTTTAG
Seq C2 exon
GTATGGAGGCGGACCTGCCGTCAATCACTTGTATGTCTGCCACACCTGCCAGAATGAGATTGAGAAGCTGGAGAAACGACGCAAGAATGAACTGGACATGTTTGTTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016163:ENSDART00000018114:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063377=DUSP=FE(23.9=100)
A:
NA
C2:
PF063377=DUSP=PD(11.5=35.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCGCATACATTGATGACCT
R:
ACATGTCCAGTTCATTCTTGCGT
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]