HsaINT0178925 @ hg38
Intron Retention
Gene
ENSG00000077254 | USP33
Description
ubiquitin specific peptidase 33 [Source:HGNC Symbol;Acc:HGNC:20059]
Coordinates
chr1:77711747-77713281:-
Coord C1 exon
chr1:77713200-77713281
Coord A exon
chr1:77711856-77713199
Coord C2 exon
chr1:77711747-77711855
Length
1344 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
TTAAATTTTTCATGCTTTAGGTA
3' ss Score
8.54
Exon sequences
Seq C1 exon
GTGTTCCTCCAAGAAAAGCTGGTTATATTGAAGACCTGGTTTTGATGCTGCCTCAGAACATTTGGGATAACCTATATAGCAG
Seq A exon
GTTTGTTTTTTAAATCAGACCATACAGTGTTGTGAAAGTCGGTTAAACTGGTTAAAAGGGGTTTGGATTATTTCAGAGATGCTCCTTGTGCTATGTGTTTATTCTTTTCCCTTACTTATTCATTCTAAAGTGTGAGTAGGAAGACTTTGTAGCTACTGTGGCATAGTCTAGATAATTAATTTTAATTTTTTCTAATTATCTATCTGTGAAGGTATGCTGTGGTAATTTAAGTACCTTGTTTAAAATACTTTGCATATCCCCACACTAAAATTTTACATATGTATATACTCACACAATTGAGTATCTTACTCTTAAATTGTAAATTTTTTTTTCTTTTTTTTTGAGACAAGGTCTTGCTCCATCAACCAGGCTGGAGTGCAGTGGCACGATCTTGGCTTACTGCAGCGTCGACCTCCTAGGCTCCAGTGGTCCTCTCACTTCAGCCTGCCTAGTAGCTGGGATCACAGGCGTGCATCACCATGTCTGGCTAATTTTGGGGTGTTTTTTGTAGAGATGGGGTTTTGCCATGTTGCCTGGGCTGATCTTGAACTCCTGGGCTGATCTTGAACTCCTGGGCTCAAGCCATGTGGCTGCTTTGGCCTCCCAAAGTCCAAAGTATTGGGATTACAGGCATGCATCACTGGGCCTGGCCTTAACATCGTAAACTTTAAAATTTTAAGATGGAGTCTCGCTCTGTCGCCCAGTCGGGAGTGCAGTGGTGCAATCTCAGCTCACTGCAACCTCTGCCTCCCAGTTTCAAGCGATTTTGTGCCTCACCCTCCCAAGTACCTGGGATTACAGGCACACATCACCATGCCTGGCTAATGTTTATATTTTTAATAGAGACGGGGTTTCACCACATTGGCCAGGTTGGTCTCGCAACTCCTGACCTTTATTTTAAAACATTTTCCACCACAGTTTTCCTACTAATTATGTTTTCTTTAATTAAATATTAAAAATAATTCATACATTGAATGCTTCTTACTTGAGAGGCCAGGGGAGGCCTTCATCTGATGAAAACTTGACTATGACTGTGATGTGTAACTAAGATTTATATGTTGTATGATACTTTTTGAAACCACTTCTTTTAGTTTGTTGTTGGCTCTAACATTTTGGAGCAGAAATAAGGGAAAGTTGAAATATAGATAAAGCAGGTTAAGCAATAAACTGATAAAGTCACTGACCTTAATAAACATAATAACAAGTCCTTATATGATTTTTGATTTTTATATTACTTTGAGAATTTTATTAAGAGGATTTATTTTTACTGGGTATTTGGCCACTGACTTAAATGTTAGAAACAAACTTCCTAGAACATTAATTCTTAAATTTTTCATGCTTTAG
Seq C2 exon
GTATGGTGGAGGACCAGCTGTCAACCATCTGTACATTTGTCATACTTGCCAAATTGAGGCGGAGAAAATTGAAAAAAGAAGAAAAACTGAATTGGAAATTTTTATTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000077254:ENST00000370794:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063377=DUSP=FE(37.0=100)
A:
NA
C2:
PF063377=DUSP=PD(17.8=35.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains