GgaINT0036572 @ galGal3
Intron Retention
Gene
ENSGALG00000008974 | E1BWB2_CHICK
Description
NA
Coordinates
chr8:19709768-19712556:+
Coord C1 exon
chr8:19709768-19709849
Coord A exon
chr8:19709850-19712447
Coord C2 exon
chr8:19712448-19712556
Length
2598 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TATTTTTACTGTCACCGCAGGTA
3' ss Score
7.75
Exon sequences
Seq C1 exon
GAGTTCCTCCCCACAAAGCTAGCTTCATAGAGGACCTGGTTGTAATGCTACCTCAAAATATATGGGATAATCTGTATAGCAG
Seq A exon
GTAAGTCTTATAGTGCAACTGAAAAGATCAGTGATACAGTTTGAGAGAAAATATGTACCAAACAGCAAGGTAAGAGTTCTGCAATTAGTATCTCTGGAAAACTTGTGGACTCATCAATGTATCTTTAGTCAGACAGTGTTCTTCAGAGGTGCGATCTTAGTTTAAGAGCAAAAAACACAGCGCAGTCAGACTTCTAGAGTTAGTGGCTCAGAAAAATACAAGTACTCTAAGTACAAAGCTAAGTGAAGGGATGGCAAACTGCCAGTTTATATAATTTGCTTGTACAAGGTAATTCTAGAAGTCAACATAGAGTAGAGTGGTACTGGGATAATGCTTGAGCATTAAATTAATAAACATGTATGGTATGTGCAAAATGATTCAAAGTAGGTCAGAAGCAGTAAGCTTTCAAGAGGTATTCTGAAAGAACTCACCGTAACAGCTTCCTGTTCTCTTATTGCCTGGAAACTACTTTTATGTTGGCTTTGAATGTATAGCTTCAGCTGCCAGTACTGCTTCAAAATAACTTGAGTATAAACGTTCCATATTAATATTCCATGCTTTTTTATCTAGGTTAGGTGTAAATGCTTGCTTATAAATGAGGGATTCTTAAGATACATATCCTTTTAATGTAACAGAAAGCTGCAGAAGAGCTTTGCTAATCAGCTGCAATATAAGGCCTCTGTATTGCACCTGCACTAAGTAAACTTGGTTGTTAACTTCTGACCATGTAAGCACTATAGCTGAAGTTCTGTTTGTGTTTTGGTAACCACAAGTGGAAAAACAGAAACAGTATTTTCTTCAGCTTATTTCCACTTTCCTAGACATACTAAATTTTTCCTCCAGCTAACTGACAGTTATGGAGTTCTCTTGGTAAACTCTGATGTTGAACTTAAACCATGTGATAGAAAGGTCTAAGTCCCAAAGACAGTAGGGTACCTGAGATTTTGAGAGTAACCTACCAGGTAGAGAAAAGATATGAATGTTTAGCAAAAATAATTTTTCCTTTTTGTCTGGTCTCCTGACTAGCACATATGTGCTCTTTAACACAGAATAGCTCTGAAGAAACTATATTTTGCTTTTTGTCATATTGTTATCTGGGAATTATAGAAGAATGTGTGCAATGGCCGCAGTGGGTAAGAAGAATTTAGTGTGGAGAAAACGAACGTGATGAAAGCTGACTTTTACTGACACTTTCATACAAGAATCAGTACAAGCCCAGACACATTTATTTTACTGCTCATCTGGCAATACACTTGTTAAGTTCCAAAATCTTTGGAAATAGAATTGCTTCAACATGAAATAGCATGATCTATACTGGACCTATTTCATTTAAGACTTGTGGACTTGTCCACAAGACTTAAGATTTCATTCTGAAGTCAGCATTGTCTCCAGTAATGCAATCTAAGTGGTAGGTGAGTGTTCTATGAAACAGCTTACTAAAATGTATTAAGTTAAGATTATTTAGTGGACTGAAGAAAACAATTGTTTTATATAAAGTGCTATTGGACTCAATGCTTTAGTTTTCAGTTAAGATAGAAGGTTTCTGTATTTAAGAAAAATAACATTCCAGATTCTTTATTGATTGTTGAACTGTAGTTCTAAAAGGTGTGTGGAGGTTGGAGGAAAGGCATCTTTAGAACATCTAAATTAAGTTATGTTTAAATCCAATGCTTTCCATGGCAGATTGTTTATTTACTAGGTAAACATAGTTGTTTCCACTCTTGCTCAAGAAATACTCATATTTGGAACTTCGCACAGAGTGCTACTTTATGTAATGTAAGGCTTTGAAATAGAATCTGAAGTTTTGAAGAGAAGCACAACTCTGACAAAAAAGAAATCAAGTAAGATGGCTCACATGGAATATTCTTATCTCAACAAGTTTTTCAACATAACCTTTGTGCTGTAGAAATACATCTCTTAATGCTGCTAGCCATTCATGGGTTTTTTCTTCATCAGACTTGTAGGCCAGTGCTGCCTGTGTTCCTAATAGAGCATATATACATACATCCATCTATATATTCTGTGCTTCTCTGTAGCAGCGGCCCTGAAAACCTTCATGTATGCAGATGCGCACAAAAAAAAATAAAAGGAGGAGAGATGCATGGAGAATAGCTTCTTCAGAACAAAACTAAAAGAATGTTAGAGACCTGTGTTGGAATAGTAGTGAGCTGATGAAGAGCTTGTCTTGGAAATGAGAAACAGACTACTTCCATAAGCAGTTTCTTAGAGTTTTTAATAAAATCACACATGGTGTGTGTATATGAATAAAACGGAATACTTGCTCACCAACATGTTTTTTTCTATAGTAATACCTTTTGAAACATCTGACATGCAAAGAATTTGAGATGGTTTAACTGGCCTTAGGTAGTAAGAAATTGGAATACGATTGTCTTAGGATTAAGTACAAAATAGTACTAGGAAGGTAAATGATGGCAATGGTAGTGCCACTGGAATGCATCGGACTTCAGATACATGTAGGAAGCTGACACTTGTAAGAAGGATCATGTACCTGTAGACATCACATGTTTTCCACAATGTTAATGTTGTTTTCATGTTTGGTGGTTTTTTGTAATTAATTTATTTTTACTGTCACCGCAG
Seq C2 exon
GTATGGAGGAGGACCAGCGGTTAACCATCTGTATGTTTGTCATACCTGCCAAATAGAGTCTGAAAGACTTGAAAAAAGAAGGAAAAATGAATTGGAGATGTTTATTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008974:ENSGALT00000014598:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063377=DUSP=FE(36.5=100)
A:
NA
C2:
PF063377=DUSP=PD(17.6=35.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]