RnoINT0161654 @ rn6
Intron Retention
Gene
ENSRNOG00000011294 | Usp33
Description
ubiquitin specific peptidase 33 [Source:RGD Symbol;Acc:1307848]
Coordinates
chr2:257593892-257595350:+
Coord C1 exon
chr2:257593892-257593973
Coord A exon
chr2:257593974-257595241
Coord C2 exon
chr2:257595242-257595350
Length
1268 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
GTTCTTACCTTCATGCTTAGGTA
3' ss Score
7.35
Exon sequences
Seq C1 exon
GTATTCCTCCACGAAAAGCAAGTTATATTGAAGACTTAGTTTTGATGCTGCCTCAGAACATTTGGGATAACCTCTACAGCAG
Seq A exon
GTTTGTTTTTTAAATCCAAAAATAAAATCATAAAACAAAATAAATCATAAAATAAAAAATAATACAATATTAAAAAATCCTAAAACAAATTGAAAGTAGTTACAGAAGTGTTGGTTTATGTCATAAATACCCAGTGTGTTATTTGATACATATGATGAATATTCTTTTTTCTTTTATTCATTCTAAAGTACGGCCTAGTATAAATAATGGGAAATTTTATGATTAACTGTAGGATACACTCTGGTATATAACTTCATATACCTTATTTAAATGATCTTATATCTCCCCAATACTAAAAGTTTACGTAGTTGTATACTACTAAAATTGGAAAGTCCTTTTTCTTTTTTTTTTAAAGAATTACTTATATTCTGTGTATGAGTACACTGTCGTTGTCTTCAGACACACCAGAAAAGGACATCAGATCCCATTACAGATGGTTGTGAGCCACCATCTGTGGTTACTGGAAATTGAACTCAGGACCTCTGGAAGAGCAGTCTTAACTCTTAACCATCTTTTCAGCTCAAAATTTGATATTCTTACTCCCAAATTTATATAATTTTGCAATGTTATTTTGTTACTAAGCATTTTAAATGTTAAAAATGCACTCACTGTGTTCCTTTTATTTGAGCATGGCAAGTCTTCATTTGATTGGACTGTGCTTGTGTAACTAAGAGACATTTTATGTTAATTTTCAAGCCCCTTTCACTTTATAGTCATTCTAATGCTGTAGTGGAAGGGAAAGTTGTAGCTATAAGGGATCACTGAAATGTACATAAAGCAGGCTAGGGGCTCAGATATAGTGCTGTTGGCCTGGGAAACATAAAATTGAGTTCTTTTTGTTTTTTATATATATTTTGACTTTTTTCATATTACTTTGAGAATTTTCCTATAGGATTTATTAAGTAATTTTTTTTTCCTTTTCTTTTTTTCGGAGCTAGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTTCTTTAAGTAATTTTTAAAGAATTATTTGGTGTGTGCTTTTGTGCTACAGAGCATGGGTGGCGGACGGAGGACAACTTGAGGGAGAGACTTCTTTGATTCCATCATGTGGGTCCTGAGGAGACCAAGACCCACTGAGCCATCTTGTCAAACTCAGGATTTATTTGTAACTGGGGATTTAAACATTGATTAAAAAGCTAGAAAGAGTTTCCTAGACCACAGGCCTTATCTGAGGTTGTGACGTTGTTCTTACCTTCATGCTTAG
Seq C2 exon
GTATGGAGGAGGGCCTGCTGTCAACCACCTCTACATTTGTCACACTTGCCAAATTGAGGCAGAGAAGATTGAAAAACGAAGAAAAACTGAATTGGAAATTTTTATTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011294:ENSRNOT00000066125:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063377=DUSP=FE(37.0=100)
A:
NA
C2:
PF063377=DUSP=PD(17.8=35.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATTCCTCCACGAAAAGCAAGT
R:
AATTTCCAATTCAGTTTTTCTTCGTT
Band lengths:
182-1450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]