MmuINT0171663 @ mm9
Intron Retention
Gene
ENSMUSG00000025437 | Usp33
Description
ubiquitin specific peptidase 33 [Source:MGI Symbol;Acc:MGI:2159711]
Coordinates
chr3:152045875-152047188:+
Coord C1 exon
chr3:152045875-152045956
Coord A exon
chr3:152045957-152047079
Coord C2 exon
chr3:152047080-152047188
Length
1123 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
3' ss Seq
GTCCTAAACTTCATGCTTAGGTA
3' ss Score
5.92
Exon sequences
Seq C1 exon
GTATTCCTCCACGAAAAGCGAGTTATATTGAAGACTTAGTTTTGATGCTGCCTCAGAACATTTGGGATAACCTCTATAGCAG
Seq A exon
GTCTGTTTTTTAAATCCAAAATCCTAAAACAAAATAAAAAATCATAAAATAAATCATAAAACAAAATAAAAAATCATAAAACAAATTGAAAGTAGTTACAGAAGTGTTGAATTATGTCATAAATACCCAGTGTGTTATTTGATATGTATAAAGGATATTTTTTTCCATAATTTATTCATTCTAAAGTATGGGTAGGGAGATTTTTAGTCAGTGGGGCTTAGTCTAAATAGTGGGAATTTTTATGATTATCTGTAGGAAATACTGTGGTATATAATTTTATGTACCTTATTTAAATGATGTAACATCTCCCCAGTACTAAAAGTTCACATAGTTGTATACTACTAAATTGGAAGTTCCTTTTTCTAAGACTTATTTATATTATGTGAGTACACTGTAGTTGTCTTCAGAAACACCAGAAAAGGGCATCAGATCCCATTACAGATCATGTGGAAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACTATCTTTCCAGCTCAAAACTGGATATTCTTACTTATTTTACAATGTTATTTTGCTACGAAGCATTTTAAATATTAAAAATGCACTAAGTGCTTTTTACTTGAGCACGGGAAGTCTTCATTTGATTAAAATCTTACTGGGTCTGTGCTTGTATAGCTAAGAATTTTGTGCTAATTTTTGAGCCCCTTTCACTTGCTGTCGTTTCTAATGCTATAGCGGAAGAGAAAGTTGTAGCTATAAGGGAATGTTAAAATGTACGTAAAGCAGGTTAGGGACTTGGTGACGAAACATAAGATCGAGAGTTCTTTTTTTTGTATATTTCGACTTTTTTCATATTACTTTGAGAATCTTCCTGTAGGATTTATTGTTTAAATAATTTTTTAAAAATTAGTTGGTGTATGTGCTTTTGTGCTGCAGAGCATGGGTGGCACTTGGAGGACAGCTGGAGGGAGAGAGTTCTTTGATTCCATCATGTGGGTCCTGAGGAGACCAAGACCCACTGAGCCACCTTGTCAAACTCAGGGTTTATTGTAACTGGGAATTTAAACATTGATCAAAGAGCTAGAAATAGTTTCCTAGAACATGTTTTTTTTTCCTGAAGTTGTGACTTTGTCCTAAACTTCATGCTTAG
Seq C2 exon
GTATGGAGGAGGGCCTGCTGTCAACCATCTCTACATCTGCCACACCTGCCAAATTGAGTTAGAGAAGATTGAAAAACGAAGAAAAACCGAATTGGAAATTTTTATTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025437-Usp33:NM_133247:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063377=DUSP=FE(37.0=100)
A:
NA
C2:
PF063377=DUSP=PD(17.8=35.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATTCCTCCACGAAAAGCGAGT
R:
CCGAATAAAAATTTCCAATTCGGTT
Band lengths:
191-1314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: