DreINT0175632 @ danRer10
Intron Retention
Gene
ENSDARG00000090418 | wdsub1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-061110-97]
Coordinates
chr6:11788627-11794704:+
Coord C1 exon
chr6:11788627-11788806
Coord A exon
chr6:11788807-11794569
Coord C2 exon
chr6:11794570-11794704
Length
5763 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAAA
5' ss Score
3.23
3' ss Seq
GTGTTGTTGTGTTCACTCAGAGT
3' ss Score
7.81
Exon sequences
Seq C1 exon
GCAGGAAGGCTTGTGGTCACTCCAGACTGATGGTGAGCGAATGGTCTGAGGAAGAGGTGTTGGCATGGTTACGAGAGGAGGGGCTGGAGGCCGTGACTGACGCATTTAAATCCAATAACATCGATGGAGAAGAGCTACTCTCTCTCAGCAAGGAGACACTCAGCTCTGACTTGCACATTG
Seq A exon
GTAAAATCATTCAGTGTGTTTTCTGTTCATGTCTTGCTGCATTCACCTTATTCTTTCATATAAGAGCCATTGGAACCTTATTTGCTGTTACAAACACTTCTATTGATTTTATTTATTTTTAGTCATAAAAACGGCTTATTATTTTGCTGCTTGATGATGCTAACTTGCATTATTTTTATGCATGGTCACAAACTCAATTGTTTGTCAGTAGTTTGAGTGATTACTTAAGTTTATTATTCCCAATCTTTTCCACATAGACAAATGAATCTGAAATAAGAGCATTGCAGAATGAGCTCGATACTGTATATTTGAGCAAAATATAACCATTTTATGTGAGGAGCCTCTTCCTTCCACAATGGAAATGTCAGGCTGACTGCTGAACAGCTGAGCCCAAGCCTCTTTCATTCATTTGAAAGCATCACTTCAGAGCTTGAAACAAAGGAAAACTGATTAGCTTCATTGAATTTCATAGTGTATTATGAGACATTGGACAGATAGAGTGTGATTACCTTCGTCTGCATTTCTTCTTCAGGTCAATCACCCCTTCGTAAAGCATTTTTTTGAATGCTCGCTGATGAAAGCAGTGTTTTAGGAGCCTTTCAGTGGTTTAGGGGGTTTCCATGACAACGCTGGTCAAAGCATGTGGCTGAATCTTAATAACAGCTTGCTTGTTTACAAACTTTCCCTGGCTCTTTTCAATATGAATGTGTGGTGGCATTTGAATGTACAAGTCACGCTATTAACTAATTAAGACTATTAGCGCGATAAACCATTAATTAGCTGCTGCAGAAGCTAGTAGTTGGGTTTATGTATTGGGTAGGATTAGAGATGTAGAATAAGATCTTAATAGGCAGGTAATAAAAGTTAATAGTTGCTAAAGTGTTACCAAACGTTTTTGCAACTCCTTACCCCAAAATCAGCATTAATAACACAGACCATTTCTGAGTACCAAATACTATTACTAAAAGTAGCATTACATTTTTGGTAATTTACAAAAGTTTGACCAAAACTTAAAATTCTGTCTTGCGGATGTTTTTGTGATGTGGTCATAATATTCTGGCTTATCCATCTTTTCTTTTTCTCTGGCTTTACCTGACAAAAGTCTTATCGCCTATCCAAGTTTTAGAAACACCAAATAATAACTTGACTTCTATTTGATCATTTAGTATCAGAAGTGGCAAAGGCCTCTAGATTACACTTATTTTAGCAGAATAAAATATGATCATGTCTTGATTTTTAATTATTTAATTAGGACAATAAGGTCTTACTTTGCTTAGACAAAAGTCATGTCACTTAACAGAAATAATACAGTACAGTGTAGAGTATAAAGTCATGCTGCAGTGCAAAAAAATAAAAAATATTGTGGATGACTCTTATGAGCTTGGAGGACTGAACCCATACATCTCTGCAATCACTCAAATAAATTATCAATAAAGTCATCTGAAATGACAAAGAAAGTGTTCTTGCAGGACTCCCAGAGTTCATCAAGATTCTTTGGATTCATCTTTAATGCCTCCTCCTTCATCATACCTCAGACTTGCTCAGTAATGTTCATATCTGGTGATTAGGCTGGCCAATCCTGGAGCACCTTGACCTTTTTTGCTTTCATGATTTTTGATGTGGATTTTTGATGTCTCACACGCCCCCATACTGAATGGAACCCCAAACCATGATTTTTCTTTCACCAAACTTGACAGATTTCTATGAGCATCTTTGGTCGATGCGGGTACCAATAGGTCTGCAGTATTTGTGATGATTGAGATGCAGTTGAATAGATTCATCAGTTAAATCTACCTTCTGCCACTTTTCCAAATGGTCAACTAGAAGTTAAGTTATTATTTTTTGCTCTTACAACTGGAATTGACAATAAGAATTTTGTCTGGTAGTGTAAATACAGTATAGTGCCTCAGACATGTATCACAATATAATAATAGTGCAGGAATGACCTTAACTTCAGAATTGTGCCGATGTCATGCAGAATTATATAAAACCCACATGGATTTTCCTGTGTATACATTACCTAACAGCAAATCTTGATTGAGTTTTGAGGAAAAATAATGGAAAGTGGCCAAAATAAGAACTAATCCTAGAGATTGTGGGGAATGTAAACACGGGATTTGTTGAGTTATATAAAGCACTTGTCTGTTTTGCTGTCCAGAGGAGAGTTTGTGTGCATTTAAGCTGATTATTTCTGCTTCAGTCCTAAAAACCAGCAGCTATTTACATAAGAAATCCTTTCCCGATGTGCACTTCCAAAAATAAAAGCAATCACTGTCCAACGTGCCACGACAGTAACATTAGCCTGTTTCATTCGATGTGACGTTTGAACAGACATGACTTGACTTGATTCCTCCGCTGTCCACTGTGAAGCCAATCCAATGTGTCCAATTAATGCTGTACAGTCTGATGCAGGTCATTTTTGGTGGCTGAAATGGTAAGGCTAAACTATAGTGACAGGTGTTATAAGAGAAAAAAAATCTGTTAATAAGACTTGTCTTTTTATGTGAGCACCAGAGTTAAACCATGCCAATAGTTTTACATGTTGGACCTTTTGGCACTGACCACACCACATACAGTTCTGTAATAGTGCCATCCACAATAGTGGATCAAAATAAAACTCTTTTGAATAATACAAAATCAGGTTCTCTCTAAAAACAGTTTGTACATTCACTGGCCAATTTATTAGGTACACCTGTCCAACTGCTCATCAATGTACATTTCTAATCAACCCATCTCATGGCAGCAACCCAGTGCATTTTGGCATGTAGACATGGTCAGGACAATCTGCTGCAGTTCAAACCGAGCACCAGAGTGGGGAAGAAAGGTGATTTAAGTGACTTTGAACATGACATGGCTGTTAGTGCCAGACGGGCTGGTCTGAGTATTTCAGAAACTACTGATCTACTGGGATTTTCACGCATAACCATCTCTATGGTTTACAGAGAATGGTCCGAAAAAGAGAACTTTTCCAGTGAGCGGCAGTTCTGATGGCTCAAATGCCTTGTTGATATCAGAGGTCAGAGGAGAATGGCCAGACTTGTTTGAGTTGATAGAAATGCAATGACCACAGTGTACACATCTTCTGATGGCTACGTCCAGCAGTATAACATGCCATGTCATAAAGCATGAATCATCTCAGACTGGTTTCTTGAACATGACAATGAGTACACTGTACTAAAATGGCCTCCACAGTCACCAGAGCTCTATCCAATAAAGCACCTTTGGGGTGTGGTGGAACAGGAGATTAGCATCATGGATCTGCAGCCGATAAATCTACAGCAACTGCATGATACTATGTCAAGATGACAAAAATCTCTGAGGAATATTTCCAGTATCTGTTTAAATGTTTAAATTTATGCCACGAAGGATTAAGGCAGTTCTGAAGGCAAAAGTGTTCCAACCTGGTACTAGTAAGGTGTACCTAATAAAGTGGCCGGTGAGTGTATGTGTATTTAGAAACATTTTGCCTTGAAATTATTAAGTAAAGATTCCCACAACATATATATATATATATATATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGACAATCTCCATTTGCTGAATCATATAATCAGCTTCAGTCATCATGAAATAATGGTCTAATTTTTTAGCTAATAATAATACTTTTTGTGTTAGTCTCTACATTCAGGTCAACTCTGTTACATCGGACTGATACAAAAAGCATATGAATTGCTCAGGAGGGAAACTGAAAAGCATTTAGGCTTGTAAATTTTCTTAATTGTACATGTTTAGGATACATCAATAGTAGATTAAATATCTGTCAACTCTGTTACTGTGAGATTGCAGTTGATTTTTCATTCACATTTTAAAGCAATAATATGATTCTGAGGGCGGCACGGTAGCTCAGTGGTCAGCAATGTTACCTCACAGCAAGAAAGTTGTTGGTTCGAGTCTTGGATGGGCCAGTTGGCATTTTTGTGAGGAGTTTGCATGTTCACCCCGTGTTCATGTAGGTTTTCTCTAGGTGCTCTGGTTTCCCCCATAGTCCAAAGACATGCGCTTTGGTTGAATTGAATAAACTAAATTGGCCGTAGTGCGTGTGTGTTTGACTGTGTATGGGTGTTTCCCAGTACTTGGTTGCAGCCGGAAGGGCATCTGCTGTGTAAAACATATGCCAGAATAGTTGGTGGTTCATTCTGCTGTGTTGACTTCTGAAATAGAGACTAAGCCGAATAATGATTGAATGAATATGAAGCTACGTGGTACCTGGTTTAAAATTAGCATCTTGAGCTAAAGCACAAAATGTTAGCGTTTTTTAAAAAAATGTAACAATCTTTTAACTTTTATGTACTGTTGGGGATGTTAACATCCACTCTGGGGTGATTTTGAGTATTCATTTGGTCACAGCTTTCTCTGTGTTTTACCTAATGGAATGATTTTTGGTGACTAATGTCATTTTGACACATATTTTGGGGAAAAAAATCAACAATACACTCTGGGCAAATTGACTGCCCTTACATTCTGTTCAGGGCTGTTTTTGCCCCATTGACTTCCATTATAATGACACTATACCAGCATGCATTCTTGATTGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTGTGTGTGTGTGTGTGCGTGTGTGTGCGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGCGCATGCGTGCGTGTGTGCGTGTGTGTGTGTTTATGTGTGTTTGTGTGTGTTTTTATGTATGTGTGTGTGTTTATGTATGTGTTTGTGTATGTTTTTATGTATGTGTGTGTGTGTGTGTTTATGGATATAGTTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATCTTTTGATCACTTACCTTGATATATCTGAGAATCAAAATAAGCAGTCCAGCTCTCAGAACATAGTAAACATAAGTGTATTTATGTGCGTGCACACACACACACACACACACACACACACACACACACACACTCTGTAATGTGATGTGATGTTTCACTCCATATAAAAGCCAGAAACGTTTTTGCACAGGCTTATCTAAAGAGTTAATGCTGACAACTGATGATCATCAGTAAAAATGACACATTTGACCTCTTCTAACAGGGAAAACCACCAACAATGAAGAATGCATGATTATATGGTGTCATGGCGTGCAGTTAAAAAAAAAAAAAGTCATTATGATGCAAGTGAATGGGGCAAAAACAGCCCCGAACATAACAAAACAGTCGTAAATCTGAACAATACACGCAAGGGTTAAACAACAGAATCACATTTAAGAATTTTTCCTGTAAATTAAACATTTGTGTTATTCCAGTTTGAGGAAAAAATAAATTCCAAATGTCTGAAGTGTTCTGTCATTGTAGAAAAGGTGAAGAGAGAGACACTTGGAAACGGCTCTACTGTTAGCACGGATGTATTGATCTTTGTACTTGAGTGATCGGCTGGTGTTGAAGTGTTGTTGTGTTCACTCAG
Seq C2 exon
AGTCTCTGGGCCTGCGGAGTAAAGTCATGAAGAAGATTGAGGAGTTGAAGATGGTGCCTGTCTATAACGGCACTCCTGACGAGTTTCTCTGTCCAATCACACGTGAGATCATGAAGGACCCTGTGATCGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090418:ENSDART00000121431:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764712=SAM_2=PU(74.2=80.3)
A:
NA
C2:
PF0764712=SAM_2=PD(24.2=34.8),PF0456410=U-box=PU(29.6=45.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]