GgaINT0048540 @ galGal3
Intron Retention
Gene
ENSGALG00000012574 | WSDU1_CHICK
Description
NA
Coordinates
chr7:38169236-38172914:-
Coord C1 exon
chr7:38172732-38172914
Coord A exon
chr7:38169377-38172731
Coord C2 exon
chr7:38169236-38169376
Length
3355 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
ATATTCCAATAACTTTTCAGAGT
3' ss Score
6.34
Exon sequences
Seq C1 exon
GAAACACTATAGAAAATGACTCTAAGATTAGAACTGCTGAGAACTGGTCAGAGGATGATGTTTCAGCCTGGCTTTGTGCACAAGGCTTCGCAGAACTTGTTGGGCTTTTCAAAGCAAATAACATCGATGGCAAAGAACTCGTGAATCTTACAAGAGAAAGCCTGATTCATGAATTAAAAATTG
Seq A exon
GTAAGAGTACAGAAATCCAAATAGTTTGTAATCTTTTGTGTATTTGTAGAATGTTGGAATGAAAGTAAGTTAGAAGTCTCATGTATGGGTACGTTTTCCTGAAATGCATTTTTAATCACTTCCATTGGTAACTGAAACAAACAAACAAAATGTCCTGTTATCCAAAGTGCTGTGTGTTTTTTCATACCTAGAAAAATTGCACATTCACTGGCAATGCCATGTTGATATGTGGTCTTACCTGCTTTTGTTTCTGTTTTTCTTTTTTAGATTTTGGGTCATTAAGTTGTGGGAAAGTAATTTCACCTTTTGTATAGACTTACTGATTCTGACCTGGTAAATAGTGCTCTCCAGTTTTTTCCTGTCAGTTTATAAAAGCGTTATGTTTCTAATATTACATGGTGAGCTACCTTAAATTTAGCAGTGAGATTCTTCACAGTACAGTTAGCATAGTAGAAAAATACAAGATGTGTTTTATTTTATACTTACTTTGTAGATAAAGCATTTGGTGTCAGTAATGCTCAAGCAAACCTTACCAATCTGACACTTGGCAGTTCATCAGGCATCCTTCTGGTTAATGTTGACCCATCTCTTTATTGCAAAACTTAAGTTACATTTTAGAAGGAATCCTAGGCTATGGCATTGTTACCACTCACTTCCTTAATTCTGAAGAAAGAAAACTTCTCTATGGTGGACTACTGTGGAACTTTCAGAATGTTCTCCATTCTCTGTGGCTAGATTTTGGCAAACACGTCAGCAGCTAATTTACACCTGAGATCGAGTATAACAGAGAGTCAAATGGGTCAAGAAACCCTTTTATATTTCTATTTTATGAAGTTAGCATTCTTCCCTGTAGGCAGACTTCTCCCCTCCTTTTTCTTAATTGTTTTGCATGTGTGCACACCTGTGGTCTTGGTATGTATCAGGTCAGTATCAGCGTATCAGTTAGCTTTGTTAAAGTACAGAAATCAACAGAATCGCTGCAAATGTCAGGAATTGCCACTGATGAAAGACTCATAGCTTTGTGTTCCTGCATACATGTTCCTTAATGTTGGAATAGCCTAGAGCCATTGCAGCAATGACCAGCTGAGACTAATGCAGCTGACCAGAGGATTATGTGTAAATGAAATGCAGTGGGACTGATGATGGGAGCTGAGCTACTGAGAAGAGAATTGTCAATGGGGAAAAAAATGAACAAAAGCAAAAGCTACCTGATTGATAGCTTTGTGATTACAGTCAAGAAAATTTTAAATTACAGATAATCAGATTGGTTTGCAAGAGCCCACTGTAAGGCAGGCTACAAGATGCAAATCCTGGGATGTGTCTTTTGACAGCACACGTAGAATTCAGGCTGAGTATTGGAAGCTGCTCCTTTCTGGCTTTCACTGGCTATAGAAGGATGCAGTGGGGATTAATTGTACGTATGAGCTGAAGCAGCTTCAGTATGTGCTTTCTAATTAATCAGGTAAAATACCCATTGCTTAGTCTCTGTTCTCAATACTTGGGTCTTTTGTGATGTATTTCTGTAATAGGTATGCTAAGTTTTCAGTATGACGGGTTAGATTTTCACAGGGATTCAGGCAGCTGTAAGAAATGTATTTAAATGCTCCAATTAAAATCTGTCTTAATAACTTCATTTCTTTCACATATTTATCAAGATTCTGGATTGGAGAATGAGCAAAGAAACAGCATTTTGGAATAGAATTTACCTCTATACTGCAGCAGGAGTAAGCTTTGGGGAAATCGCTCAGTATACATCAAACAGAAAATTGTGCTTGCTTTGTTAATAAGAAAAAAAATCTTAGTTTAAGTGTTCTTTTATAGCTTGTTTTCAGGAGATGACCTGTCATGAATAATTCGTTAATTCCTGACTGGAGGTTTTAATCAGGAGCTAGTTAATTGAAAGTGCAAACTGAATGGAAGAATTTGGCTGCATGAGAGGAATCTAGGAAAAGTTGCTCTTGTGATGAAGATTGTAAAAGATGCCCTCAAAAAATACAGTTACAACTACAGAATTTGGTTCCTTATTTCCTTTCTTTTCTTTTGTTATATCCTTAATTTTTCTTGATCCCAGGCTGATCCCACAGATCTTCACAAAATTGCCATGCAAAATCTTCCTTAAGAATAAGCATGAGCTTTTTATTATATTTCAGTACCGTATTTCAATTCTTACAGTATTTTAATCCTTACATATGTCATTACTTAATCCTTTTTATAGAAATTAGGTACTTAATGAGTTCTTTGCCTCAGTCTTCACTGGCAGCCAGGATTCTCACATGCCTGAATCTGAACCTCCAGGTGGGAAATGGGGAAACAAATTCCCCTCCACTGTAAGGACAGCACAAGTCTGAGACCAGCTCATGAGACTGAATGTGTACACATCCATGGGGCTGGATGACATGCATCCCTGGGTCCTAAGGGAGGCTCCTGTGAAGCTGGTGAGGTTCAACAAAGCAAAGCCCAAAGTTTTGCACTTGGGTTGAGGTAATCACCGACATGTACACAAACTGGGACAACTCCTTGAGAGTAGCCCTGCTGGCAAGGATTAAGCAGTCCTGGTTGATGAAAAACTGGACATGAGCCAACAGTGTGTGCTCACAGCCCGGAAGACAGATGCTACCCTGGGTTCCATCAGAAGAGGGGAGGCCAGCAGGGTGAGGGAGGTGATTGTTCCCCTCTATTCTGGGTCTAAAGCCCCTCTGTGAATACAAATTTAAGTTAGTAATAGTAGTAAAAGTGCTATTTTGTCATAACTAAGTCAGTGCCAAGCATTTATAAAAAAAATATGGAGTTCAGCAATTCATTTTATGTAAGCAGAGGCACTAAGATGCTACAGGCCTAAGATCATCTCTTTCATGAAGCAGGAGCACGCTGCAATGAAGTATAATTTACAGGCGTGGTGTACAAACACACTTTGGCATGGCTGATCTTGTGAGGGGGTGGTGGAAGCACTTGTGTACTCTTATACCATTGCATTGTTAGGTTTATAATCCAGCTTAAAGGGAGAAACACTCCTGATTCTCCTACTCCATCACAATTGTAGCTGCAGTTAGCTTTGCACGTGCAGCAGTGCATGTGATCCTATTATGCATCAACTAAAATGCAGCTCTGCCCATTACCTGTGGCTTTGTGCAACATTGCACTTGCATTTGTTTTGCCATTTGTTTTCCTTCCCCCACAGAGCTATTGCTATCCATCGGGACTGGCAGGCACTGGCCAGGGGTCTGAGGACTTTTCTGTATTCGGTGGGGATGGGAGGATTGAGCTGTGTCTCCTCTGGCATGGCAGTAAATGTAAGAACCAACCTCTCTGCCTCACATAATGGTGTTTTTCACTCTATATTCCAATAACTTTTCAG
Seq C2 exon
AGTCTCTTGGCCTGCGCAGTAAAATCCTCCAGAAGATCGAAGAGCTGAGGATGAAAATGGTCTCTGTTTCTGTTGCTGTTCCTGATGAATTCTTATGCCCTATAACACGGGAGCTCATGAAGGATCCTGTCATTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012574:ENSGALT00000020533:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0053625=SAM_1=WD(100=75.9)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]