RnoINT0165483 @ rn6
Intron Retention
Gene
ENSRNOG00000005990 | Wdsub1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:RGD Symbol;Acc:1359296]
Coordinates
chr3:45930641-45934258:-
Coord C1 exon
chr3:45934082-45934258
Coord A exon
chr3:45930782-45934081
Coord C2 exon
chr3:45930641-45930781
Length
3300 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
3' ss Seq
GGTAACGGATTTTCTTTTAGAGT
3' ss Score
5.98
Exon sequences
Seq C1 exon
GAAGCGTAAGCGATCAGCTGAAACATTTCATTGAGGACTGGTCAGAGGAGGATGTCTCAAAATGGCTTCGTGCTCAAGGCTTGGAAGACCTCGTTGATATTTTCCGGACAAACAACATCGACGGGAAAGAACTATTGCACCTCACAAAGGAAAGTCTGGCTGGTGATATGAAAATCG
Seq A exon
GTAAGGAGAGTGGAGACCGACCCGCAGTCCTCAGATTCTCAGTGAGGTCCCTGCTGACCTCAGGGCTTAGCTGCTTGTGGTTCCCTCCTTCTCTTCTTCAGGTCAGTCCTGTGTAGGAGAGCACACTTGCCTACTTAGAAAGAGGAAAGAATTTCTTCAAGTACCCAAACCCAGCTTAGAATTATAATTTTTGAAAGTTATATACCCAGTGGGGGTGAAAGACAGCACCTTATTTTTTATACTTTAACAACACTTGATTACAGTTCAGGTCCTTAACATTTACTTTTCAGAAAAAAATCTTTGTGTATGTGTATCCATCTACATAGGTGTCTCTGCATGTGCGGGTGGGTCACAGGGCCCTCTGTCATTGCCCAGGGGCCACATATGCTGTGATTTTATGACAGGCTATGCATCTTCAGTACTAAGATTATGAACGTGGGTCACCATGCCTGGCTTGTCACGTTCTGGGTTCTGGCTGTTGAACTCATCCTCACGCCTGTGTGGCAGCTGACTGAGATACCTCACCAGTCAAAGTGACTCTGAAGCGAGGTTTACACTTGGCAGTGGTGTGTGTGCACACTCATGTTCGCAGAGTGTTACAGCCATTATTACCACTGTGTAATTTTGGAACATGTTTATCAGCGCTAAAAGAAATCCCATCCCCTATTTCTTTCCCCTTCTTTCCAGCTTTTGGAACCAGTATTTTGTGTGCAAACTTTCCTGTTATTGACTTTATATTAGTTGACTTTATATTAGTACTCGGTGCACGTGACCTTTTCTGTCCGGCTTTTGTCCTTTCGCTTGTCGTCAGTTGATAGAATTCGGGACAGCGCCATGTTTTTAGAAGTAATAAATAATACTTCTGTGAATGTGGAGTTTTTGTATGAATGCCTTTTTTTCAGGTTTCTCGTGTACCCATTCATAGTAGAGTCAGTGGACCGTGGGTGATCACGAGTGGCACTGGAGGAGTTGACAGTCCGTATATTATGCAGTCCCACCAGCACTAGGCGTGGCCCCGGTGTCTCTCCAGCACTGTCCAGCAGTTGTGGTTTCTCCTTTAGGCTTTGGTTTGCATGTCCTCATTGACGTAGGTTGCTGCCTTAATGCATCTGGGTTGCTATGGCACATCCCATAAACTACCAGAAATTGATTTCTTCATTCTGCCCAATCCAAGATGAAGGTACTGGAAGGTTTGGTGTCTAGTCAGGAGTAATTTCTAGTTTATGGACAGTACCCTTCCCACTGTACCTTCACTTGGAGGGATGGATGAGTTCACTCTCTGGGGTCTCTGTTCTAAGGGTTCTGATCCTGTTTGTCCCCAAAGCCCTACCTTTTAACAGCACTGTGTGATTTACTTCTGCTTTCATACTTGGTCTTGGCCTAAGGTTTCATGGTCTTGGCCTAGGCCAGAAGGCAGTGGTGGCAGGTTTCATGGACTTGGCCTAGACTGGAGGGCAATGGTGACAGGTTTCACATAGGACATTCTGCTTTACAGTTTGGAAAGCTAGCACATTCAGTAATTTAGGAGCAGAATCAGAAAATGTGTTCTCTGGAACATCTGAAATGTCTGGTATTTTAGTATTATATAACAAGATCTATGTGGCAAACTCTGCAATTCTCCTGCCTCAGCCTCTCGCAGGCTAAGATTATAGGCATGCATACTACACACCCATTCCAAAGGGTGTTGAAATCTTCTGTTTCATTTCTCTTCAGGATAGAAGTTAACTTTTAATCTTCAACTGCTATTTTAAACTACAAAGAATTTTCTTTAGTCTTGAATTTTAGGAACAGCACACTTTTCCTTAAGACAGTAAATTGGACTGAGACAGAATTCATGTTGGGATTGAAAATGAGTAGAAAAGGCAAACTGGTGGCATACACGCTGATGTCTGCTTTCTACACGCAGAGATGTTTTGCCTGCATTTGTCACTGTAGCTTCATCCCTCAGTTCCTAATGCCAGTGTAAAGTCCAGACCTGCTAACTGTCTGGGATATGGGAGTAGCCTATCACTAAAAAGCACATTGGGATGTGGTGGTCCAAAGATAGTCGTATATCCAGCACGGTGGACACAGTAACAAGGTAGTGTATCCAGCACGATGGACACAGAAACCATTGCTAAGAGATTGAGCACTGTGAAACCCCTTGTCAATAGGCCTTTTGTAAATGTAAGAAAAAGGTTTTTTTTTTTTTAACATGCTTGAGTTTCTCAATATAGTATTTTAACCAAAGCCAAGCCATTTTCTAGTTTGCCAATGAAATGCTCATAGAAAGATCTTGTTTCAAAAAACCAGGTTCTCAGGAAGGGTGACTAAAGGGTGCCACTGTGGATGTGTTCTCCATCTCTGTACTTCATCTTCTGCCTTCCAACTCTTCCAGTTCAGTCATTGTTTCCCCTAAGAACTGACTCCTTATGCCGTCCATTTGTGTGAAGAGAATCTATCCACGACGCTGAGATGTTTTAAGGCGTTTGTGAATCTGTGCGTTTGTGAACGCCATTGTCTAACTCAAGTATGCATGCTAAAGAACAAGAAGTCAGTTTTGGACAGGGTCAGCAAACCCCTCAGTCCAGTCACTAGACCCGTGTGTGTTCACCAGCCTCGGTTCAGAGCCAGGCCCTTGGAAGAGTGTGGTGCCGTAGAGCTTGGAGCCTGGAATTGATAAGCTGGTAGAAAGGTCAAATGGCAAGTGCAGGTTCACTGGGTCAGAATTCCTATACTGAGATGAATAATCAATCATATATTGATAAACTGAAATGAGAGGGGCTTTGTTTGTTCTTTGTTTTTACCAGAGTTCACTTTTTGATCTTTTCTTTCTAAGAACTCCTAAAAGCCCATGAGCCTTTGTTTGTTAGTTGTCTGGGTTGCTAGGGCACGGGCGCGTGTGCCTCATCGTCCATGTGTTAAGGCTCAGGTGCCAGTCCGTGCTGCCGCAGGGGGTTGGCAGAGCTTTAAGAACCGAGACTCAGCCAGATCCAGTTAGCTCACGGTGATGTCCCTGCAGAGGACACTGGGGCTGGCTCACCTTCCCTCCCCCTCTCTTGCTTCCTGGACTGCAGGAGGCGCATGGCTTCATTACTGAGTGTTCCCATCGCAGTCTTCTGCTTCGAGACAGGCCAGATCTTCCACCTCTCGGTTGGTCTGAATGTTGTGCCCCGTGCTGCCTCCCTGGAAGATGATACTGATAGCTTCATGCATTACCTGTCCTCACAGCCTCAAGTTCCAAAAGTTTATCTCACTTCCCAGGAACATTTCATTTTACAGACTTTCACTTGCTGCCCGAGGTAACGGATTTTCTTTTAG
Seq C2 exon
AGTCTCTAGGTCTGCGCAGCAAAGTCCTGCGGAGTATTGATGAGCTCAGGACCAGGATGGAGTCCCTTTCTTCCGGAATCCCTGACGAGTTCATCTGCCCAATAACCAGGGAACTTATGAAGGACCCCGTCATCGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005990:ENSRNOT00000008168:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764712=SAM_2=PU(74.2=81.7)
A:
NA
C2:
PF0764712=SAM_2=PD(24.2=33.3),PF0456410=U-box=PU(28.8=43.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]