GgaINT0048540 @ galGal4
Intron Retention
Gene
ENSGALG00000012574 | WDSUB1
Description
WD repeat, SAM and U-box domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001026434]
Coordinates
chr7:36032900-36036578:-
Coord C1 exon
chr7:36036396-36036578
Coord A exon
chr7:36033041-36036395
Coord C2 exon
chr7:36032900-36033040
Length
3355 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
ATATTCCAATAACTTTTCAGAGT
3' ss Score
6.34
Exon sequences
Seq C1 exon
GAAACACTATAGAAAATGACTCTAAGATTAGAACTGCTGAGAACTGGTCAGAGGATGATGTTTCAGCCTGGCTTTGTGCACAAGGCTTCGCAGAACTTGTTGGGCTTTTCAAAGCAAATAACATCGATGGCAAAGAACTCGTGAATCTTACAAGAGAAAGCCTGATTCATGAATTAAAAATTG
Seq A exon
GTAAGAGTACAGAAATCCAAATAGTTTGTAATCTTTTGTGTATTTGTAGAATGTTGGAATGAAAGTAAGTTAGAAGTCTCATGTATGGGTACGTTTTCCTGAAATGCATTTTTAATCACTTCCATTGGTAACTGAAACAAACAAACAAAATGTCCTGTTATCCAAAGTGCTGTGTGTTTTTTCATACCTAGAAAAATTGCACATTCACTGGCAATGCCATGTTGATATGTGGTCTTACCTGCTTTTGTTTCTGTTTTTCTTTTTTAGATTTTGGGTCATTAAGTTGTGGGAAAGTAATTTCACCTTTTGTATAGACTTACTGATTCTGACCTGGTAAATAGTGCTCTCCAGTTTTTTCCTGTCAGTTTATAAAAGCGTTATGTTTCTAATATTACATGGTGAGCTACCTTAAATTTAGCAGTGAGATTCTTCACAGTACAGTTAGCATAGTAGAAAAATACAAGATGTGTTTTATTTTATACTTACTTTGTAGATAAAGCATTTGGTGTCAGTAATGCTCAAGCAAACCTTACCAATCTGACACTTGGCAGTTCATCAGGCATCCTTCTGGTTAATGTTGACCCATCTCTTTATTGCAAAACTTAAGTTACATTTTAGAAGGAATCCTAGGCTATGGCATTGTTACCACTCACTTCCTTAATTCTGAAGAAAGAAAACTTCTCTATGGTGGACTACTGTGGAACTTTCAGAATGTTCTCCATTCTCTGTGGCTAGATTTTGGCAAACACGTCAGCAGCTAATTTACACCTGAGATCGAGTATAACAGAGAGTCAAATGGGTCAAGAAACCCTTTTATATTTCTATTTTATGAAGTTAGCATTCTTCCCTGTAGGCAGACTTCTCCCCTCCTTTTTCTTAATTGTTTTGCATGTGTGCACACCTGTGGTCTTGGTATGTATCAGGTCAGTATCAGCGTATCAGTTAGCTTTGTTAAAGTACAGAAATCAACAGAATCGCTGCAAATGTCAGGAATTGCCACTGATGAAAGACTCATAGCTTTGTGTTCCTGCATACATGTTCCTTAATGTTGGAATAGCCTAGAGCCATTGCAGCAATGACCAGCTGAGACTAATGCAGCTGACCAGAGGATTATGTGTAAATGAAATGCAGTGGGACTGATGATGGGAGCTGAGCTACTGAGAAGAGAATTGTCAATGGGGAAAAAAATGAACAAAAGCAAAAGCTACCTGATTGATAGCTTTGTGATTACAGTCAAGAAAATTTTAAATTACAGATAATCAGATTGGTTTGCAAGAGCCCACTGTAAGGCAGGCTACAAGATGCAAATCCTGGGATGTGTCTTTTGACAGCACACGTAGAATTCAGGCTGAGTATTGGAAGCTGCTCCTTTCTGGCTTTCACTGGCTATAGAAGGATGCAGTGGGGATTAATTGTACGTATGAGCTGAAGCAGCTTCAGTATGTGCTTTCTAATTAATCAGGTAAAATACCCATTGCTTAGTCTCTGTTCTCAATACTTGGGTCTTTTGTGATGTATTTCTGTAATAGGTATGCTAAGTTTTCAGTATGACGGGTTAGATTTTCACAGGGATTCAGGCAGCTGTAAGAAATGTATTTAAATGCTCCAATTAAAATCTGTCTTAATAACTTCATTTCTTTCACATATTTATCAAGATTCTGGATTGGAGAATGAGCAAAGAAACAGCATTTTGGAATAGAATTTACCTCTATACTGCAGCAGGAGTAAGCTTTGGGGAAATCGCTCAGTATACATCAAACAGAAAATTGTGCTTGCTTTGTTAATAAGAAAAAAAATCTTAGTTTAAGTGTTCTTTTATAGCTTGTTTTCAGGAGATGACCTGTCATGAATAATTCGTTAATTCCTGACTGGAGGTTTTAATCAGGAGCTAGTTAATTGAAAGTGCAAACTGAATGGAAGAATTTGGCTGCATGAGAGGAATCTAGGAAAAGTTGCTCTTGTGATGAAGATTGTAAAAGATGCCCTCAAAAAATACAGTTACAACTACAGAATTTGGTTCCTTATTTCCTTTCTTTTCTTTTGTTATATCCTTAATTTTTCTTGATCCCAGGCTGATCCCACAGATCTTCACAAAATTGCCATGCAAAATCTTCCTTAAGAATAAGCATGAGCTTTTTATTATATTTCAGTACCGTATTTCAATTCTTACAGTATTTTAATCCTTACATATGTCATTACTTAATCCTTTTTATAGAAATTAGGTACTTAATGAGTTCTTTGCCTCAGTCTTCACTGGCAGCCAGGATTCTCACATGCCTGAATCTGAACCTCCAGGTGGGAAATGGGGAAACAAATTCCCCTCCACTGTAAGGACAGCACAAGTCTGAGACCAGCTCATGAGACTGAATGTGTACACATCCATGGGGCTGGATGACATGCATCCCTGGGTCCTAAGGGAGGCTCCTGTGAAGCTGGTGAGGTTCAACAAAGCAAAGCCCAAAGTTTTGCACTTGGGTTGAGGTAATCACCGACATGTACACAAACTGGGACAACTCCTTGAGAGTAGCCCTGCTGGCAAGGATTAAGCAGTCCTGGTTGATGAAAAACTGGACATGAGCCAACAGTGTGTGCTCACAGCCCGGAAGACAGATGCTACCCTGGGTTCCATCAGAAGAGGGGAGGCCAGCAGGGTGAGGGAGGTGATTGTTCCCCTCTATTCTGGGTCTAAAGCCCCTCTGTGAATACAAATTTAAGTTAGTAATAGTAGTAAAAGTGCTATTTTGTCATAACTAAGTCAGTGCCAAGCATTTATAAAAAAAATATGGAGTTCAGCAATTCATTTTATGTAAGCAGAGGCACTAAGATGCTACAGGCCTAAGATCATCTCTTTCATGAAGCAGGAGCACGCTGCAATGAAGTATAATTTACAGGCGTGGTGTACAAACACACTTTGGCATGGCTGATCTTGTGAGGGGGTGGTGGAAGCACTTGTGTACTCTTATACCATTGCATTGTTAGGTTTATAATCCAGCTTAAAGGGAGAAACACTCCTGATTCTCCTACTCCATCACAATTGTAGCTGCAGTTAGCTTTGCACGTGCAGCAGTGCATGTGATCCTATTATGCATCAACTAAAATGCAGCTCTGCCCATTACCTGTGGCTTTGTGCAACATTGCACTTGCATTTGTTTTGCCATTTGTTTTCCTTCCCCCACAGAGCTATTGCTATCCATCGGGACTGGCAGGCACTGGCCAGGGGTCTGAGGACTTTTCTGTATTCGGTGGGGATGGGAGGATTGAGCTGTGTCTCCTCTGGCATGGCAGTAAATGTAAGAACCAACCTCTCTGCCTCACATAATGGTGTTTTTCACTCTATATTCCAATAACTTTTCAG
Seq C2 exon
AGTCTCTTGGCCTGCGCAGTAAAATCCTCCAGAAGATCGAAGAGCTGAGGATGAAAATGGTCTCTGTTTCTGTTGCTGTTCCTGATGAATTCTTATGCCCTATAACACGGGAGCTCATGAAGGATCCTGTCATTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012574:ENSGALT00000020533:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764712=SAM_2=PU(74.2=79.0)
A:
NA
C2:
PF0764712=SAM_2=PD(24.2=33.3),PF0456410=U-box=PU(28.8=43.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]