DreINT0176202 @ danRer10
Intron Retention
Gene
ENSDARG00000102414 | wu:fd14a01
Description
wu:fd14a01 [Source:ZFIN;Acc:ZDB-GENE-030131-5336]
Coordinates
chr22:281231-281547:-
Coord C1 exon
chr22:281452-281547
Coord A exon
chr22:281363-281451
Coord C2 exon
chr22:281231-281362
Length
89 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
ATCTTGTGTAATCCCAACAGGAG
3' ss Score
8.14
Exon sequences
Seq C1 exon
ACCGAGGAAGACAAGAAGAACGTGACTCGCCTGCAGGATCTGGTGGACAAGCTGCAGCTGAAAGTGAAGGCCTACAAGCGCCAGGCTGAAGAAGCT
Seq A exon
GTAAGTCTAATATCCAATGCCTCCTGCAGTGTGACGCTTTGATAAAATGACAGATAAAAGTGGATGGATATCTTGTGTAATCCCAACAG
Seq C2 exon
GAGGAGCAGGCCAACACTCACCTGTCCAGGTACAGGAAGGTGCAGCATGAGATGGAGGAGGCTCAGGAGCGTGCTGACATCGCCGAGTCCCAGGTCAACAAGCTGAGAGCCAAGAGCCGCGATGCAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102414:ENSDART00000098072:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.562 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(4.7=90.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTGGTGGACAAGCTGCAG
R:
TCTCAGCTTGTTGACCTGGGA
Band lengths:
168-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]