DreINT0177869 @ danRer10
Intron Retention
Gene
ENSDARG00000077987 | zfat
Description
zinc finger and AT hook domain containing [Source:ZFIN;Acc:ZDB-GENE-130204-2]
Coordinates
chr16:25441581-25443017:+
Coord C1 exon
chr16:25441581-25441701
Coord A exon
chr16:25441702-25442868
Coord C2 exon
chr16:25442869-25443017
Length
1167 bp
Sequences
Splice sites
5' ss Seq
ATGGTACAA
5' ss Score
2.37
3' ss Seq
AGTGATACTTGTGCGTTCAGGTG
3' ss Score
5.85
Exon sequences
Seq C1 exon
GTAGTGGAGTCAGTGGAGGAGCCGACTATGCAGTACCTGCATATAGCTGAGACTGAAGATCCACAAGGAACTGAGACGGCTGTATCAGCTCTGCAGGACCTGCGATTCAATACACAAAATG
Seq A exon
GTACAAAATGTTTACCTACAGTGGAGTAACAAGTATTCAACATGTCATGTTTTTTCCTGGGAATAATATTTCCAAAAGATGTTGACATGGAATTGAACCAGATTTTGGTAAAAACCTAAACAATACAAACATAAAAATATAACATAACTAAAAAAATAGGAAAAATTTGTTGTGTGTAATAGCAGTGAAATGACACAAGTAGAAAGTTCTGAACTACTGAAACGTAATTAATGCTTCATATAAAAGGCTTTTTTGATGATGGCAGCTTAAAGACACCTCTCATATGGAGAATGAAGTCACCTCTGGAGATATGGAGAATGAAGTCACATACATTGCTAAGGTGTGATTTCTTCACCCTAGAATTATAAGGTTCTCATTGACTTATTGACAAATTCTTATTAAATGACAAATTATTTACAATATGGTATGTGTTTTAAAAGTTGTTTACATTTTAAGACTTTTTATTTGAAAAAAGCTAATGTTACACACATATTGTCTGCTATGGAATGCAAAAACTTTAAAGCTCTAAATCTCAAAAACATACAGATAGAACCTTATAATTCCAAGGTGCCGATTTGTTTTACAGGCTTCAACAGAGAGTAAATATTTTAATGGGTCTGTGGGTTTTGTCTATGCAGACTGATCTTTATTTTGTATTCTCTATTGGGTTCAAATCAGGTTATTAGCTGGGCCATTCTACAGCTTTATTATCTTTCTCTGAAAGCATTTGAGAGTTTCCTTGGCTGTGTTTTGGATCATTTTCTTGCTGTAATGTCCACTCTGGATTCATCTTCATCATCCTGATAATGTAGATGTTGGACTAAAGCAGCCAATATTCATTTACACTGTGGAAGGGCAGAGGGTTGCTAAATAACTTCTGAGTGATTTCAGCTGCTGTCTGGGCTTTCACTGCCTTTTTTTTCATCATCACCCTTTTTTATTTATTCAATACTTTTTTCCTGTGTCATATCATTTAATTACACTTAGGTTAATTTTTAAACAAATTCCATTCATTTATTAGTTATAAACATCTGGTAAAAATTATAAGTCAAAAGCACCTTGAGAAAAATGGTGACGTGTTGAATACTTATTTCCTCCACTGTATTTCCTTGAACAGTTGTGTAATTTCTGTCAAGATGTTTTCTGAAGTGATACTTGTGCGTTCAG
Seq C2 exon
GTGTTGTGTCTGCAGCAGCAGGAGACAGGCTAGATCCAGCATCAGTCAACATTCTCCAGCAGATCATCGAGCTGGGCTCTGAGAATCACGATGCCACTGTGGCCTCTGTGGTGGCAATGGCTCCTGGCACAGTCACTGTTGTAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077987:ENSDART00000156351:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.537 A=NA C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGTGGAGTCAGTGGAGGAGC
R:
CTGCTCTACAACAGTGACTGTGC
Band lengths:
270-1437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]