HsaINT0185394 @ hg19
Intron Retention
Gene
ENSG00000066827 | ZFAT
Description
zinc finger and AT hook domain containing [Source:HGNC Symbol;Acc:19899]
Coordinates
chr8:135521862-135524844:-
Coord C1 exon
chr8:135524718-135524844
Coord A exon
chr8:135521993-135524717
Coord C2 exon
chr8:135521862-135521992
Length
2725 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
3' ss Seq
CTTTGCTTCTTCCTCTTAAGGCG
3' ss Score
8.14
Exon sequences
Seq C1 exon
ACAGCAACAGAAGCTCCTGAGGAGCCCTCCACCCAGTATCTCCACATCACAGAGGCCGAAGAAGACGTTCAAGGGACACAGGCAGCGGTGGCCGCGCTCCAGGACCTGAGATACACCTCTGAGAGTG
Seq A exon
GTGAGGACGCCTGGTCTTCCTTTGCCATCTCAGAACTGTCTTTCCTAGACATGCTGAATGAATGCGTTTGCAGATGAATGATGTCCATCAGGTGATCTACTTCCGAATCCCTGACCCAGCGTTCAGACTGCAGAAGCAGCCCCATTGCCAGCCCCCAGAGATCTCTGCCTCCAGAAATGCTCTAGAACAGAGCCAAAGCAGAGGGAAAGCCTTCGAACAGGGCCGCAAGAGTCCCTCACATCTCTTACCACATTTAATTCTCTGAACCGCCTTGTGAGGGGAGGAGATCTGACTATTCTCACTTCACAGATGCAGAAGGTTGCTTTTCATTGTTAATGGTTGGCTAATGGTTAATGGTTGTTAGTGGTTGACTGAGGGTCACCCACTTTAGGGTGTTGGAGCTCATCCTGGAATCTGGGTCTCCTAACTTCTTGTCACGGCATCATCCCATTCCATGCTTCCTCAGGGACATCTCCTCCAGGGCCTACAGGGGCCAGGCAGGCAGTGACAGGAGGTGGTGTGGGCTCAGTGGGTGGTAGAGAGTAGCAGAGACTCTGGCGTGCAGGGGGTCACTTTGCAGACCTGAAAGACCAGGATCGCTCATTCTCCAAGTCCTTCCCAAAAGGCCCAGTCAGGATTTTTACATCAAATGTCATGATTTTCAAATGTTAAATCAGTTCTAAAAAAAACAAGCCACTGTACCAGCCTAGTGGCAGTTGGGGCATTATGCTTAGAAAACAGTTTTTCTTGATGCTCTTTTTAAAAGATGAACAGAACACAAGTTAATGTTTCATACCACAGCCCTGTACATATCTGGAGGGCAGAGGTCAAGCAGGTTGGGTTAAAAGGGAAGCATTAGGTGAAATGAAACGGTGATAGGAAATAGGAGTTAGAAAGACACCATTTTTACCCAGTTCCTAAAACCCCAAACTCCAGATTGTAAGAAAGCTGCACAGAAAACTCCTGTGGGCCAGTTGGTTTAGGGAAGATTAATGGACAGGGCTGTGTTCACTGCCTGCTGAGCTGCAGGGAATTCAGGAGGCAGTGCCTCCACTTCTGCAGACGGGAGAGTCGAGGCCCAGCTGTTAAATGTGGCTCTCAGCACTGAGGTTCTGTCAGAACTTGAGTTTCCTTCCATGATGTCCAGTGACATCAGTGATTGCTCATGGCCTACAAGATGCAGCCTGTCTGTCTTCATCCCCTATGAGCACACACACACCCCCCACACACACTCTCACTCTCAGACTCACTCACTCTCTCACTCCTTCTAAGGCCCTCCGATGTCTCTTCCTAGCTCTTAACTTTGCAGCTGAAAAGGCCAGGCTCAGCTTCTCTGGCTCCTGCCTGGCCTTGTCACTGTCTCTTGCCACCCCATTCCTGGGCTGTGCTTCCCTCTGCCAGATTTGCAGCTCTCAGAAGGGACACACGCTCCAGTGCTCCCTGGGGTATGGCCTGGTTTCTTCTCCCTCACAGCCTTTTTCTGCCAAACTCATCCTCATCTTCAGTACTCAGACTGCAGGTCACCTCCTGAGAACCCCGTCCCTTTTCTGCACTGTTTCCTAATTGCACTCCTGACATGGGAGCTGCCAGGTGCTGTAAGGATTTGCTTACAGTCTGGCTTAGGAGGTTGTGAGCCCTGGGAGGAGTCGGGGGGTGAGGGGGAAGGGGTAGGGCTTTGTCTTTATTCTTAGCAGGAGCAATAATGCTAGGGCTTGATAAAGGGTCATTAAGGGAGTCCATGGATGCGGAATTAGAACCTCGCCTCAGTAAGTTGCACAGGTAAATGTTTTCGTCCTTGCATGTTCGGAGTGGTTGGCTGCAAGGTACATTTGCACCATTTCCCTTAAGGGGCATGTGTTTGGGGGTGCCGGCGATGCATTGTGAATATAAGTCCGCCACTGCCTCAGCCACTGGCTTGTCCTACCTTCTGCATGAGACACGTTGAGTTCCCCTTCTCTGATCTCTTATTGATTGACTCGCATTGGAACACGGCCCACAGAAAGCTGCCCATGAGGATGAAAATGTTGGCAGAGACTGCATAATATCATGCTGAGGTGGAGATCAAGCAGTCATTTCTCTTTTAGTAAATTAGTGATCAGGGTCAGGGTGTGCTCAGGACGGTTGCAGATGGCCTGGCAGATGGTGGGAGCAGGCGGGGATACTAAATAGCTGCCTGATGATGCAGAATCCCGTCTTTAGAGATGGTTAAAATAGAACCCCCAGCTTCAATTGGTTTGGAGTTCCAAAGCCTACTCGTTGAATAATTGATACATCTTTGGATGTTTTGCCCATAACTTGTGGAATTTCTTGGCACACACTTTCATTGAGTCTGCGGCTGAACGGGCTTGCTGGGTGCTCCCAGGAGTTCAGCTTCGAGGGCAGCCACATGTCCGCATGTTAGGACTCAGAGCACGTGGGTTCAAGTTCTGGCTTTGTGGTGTAACTGACTCAGTGGCCCAAATGAGGCTTCTACAAAATGCAAATAACGTCTCAATGTCCCATCCTCACAGGGTTGCTTGGGGTTTTGAGATGTTCTTATAGAAAATGCTTTGTAAGCTATAAAGCACTATACAGATTATTTCTGTTGTCAAACTGAGCGATTACGGAGAGCCCATGCATCCTCTGGAGAAGGCGTCACCCGAGAGAACAGACAGGCTGGTTTTGCATTCCATGTCCTTCAGCACCAGTGGCCTGAATGGTGTCCTCTTTGCTTCTTCCTCTTAAG
Seq C2 exon
GCGACCGACTGGACCCCACGGCCGTGAACATCCTGCAGCAGATCATTGAGCTGGGCGCCGAGACCCATGACGCCACTGCCCTTGCCTCGGTGGTTGCCATGGCACCAGGGACGGTGACTGTGGTTAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066827-ZFAT:NM_001029939:15
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.591 A=NA C2=0.168
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134781=XdhC_C=PU(34.7=59.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)