RnoINT0167640 @ rn6
Intron Retention
Gene
ENSRNOG00000025140 | Zfat
Description
zinc finger and AT hook domain containing [Source:RGD Symbol;Acc:1310886]
Coordinates
chr7:109055032-109057918:-
Coord C1 exon
chr7:109057795-109057918
Coord A exon
chr7:109055163-109057794
Coord C2 exon
chr7:109055032-109055162
Length
2632 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
3' ss Seq
CTGTTGCTTCTTTCCCATAGGTG
3' ss Score
12.52
Exon sequences
Seq C1 exon
CCAGCGACAGAGACTCCCGAGGAGCCCTCCACCCAGTATCTCTACATCACCGAGGCTGAAGATGTTCAGGGGACACAAGCAGCTGTAGCTGCACTTCAGGACCTGCGATATACCTCCGAGAGTG
Seq A exon
GTAAGGACATACCTGGTTTTCTTCCTCACTTCAGTGATGCTCTTTATGTAATAAATAAGCCAACATGTCTTTCCCTGTAAATGCTCCAGAATGAACTTACCCAGAGTGGGGCCTACGTAGCTCAGACTTATTTCCAGAGCAACTTTGGGTGTGGGCTGTCCTGCCATTCTTACTTAACTGCTGTGTAGATGGCTGTCCACTGAACATAGTGGAGTCTTCCATTTAGGTCACAGAGTTGGAGTCTGGTTCTCCTGACTTACCTCAAGGCAGCCCTACCTACAACCTCATGCTTCCTTATGGCCTTTATTTCACAGGTCTTATCCCAGAGTGTCCAGGCAGGTGATAACAGTAGGTGGCATAGGATGTGATGTACTGGTGTGTCACCCCAGGACTACCAAAACTCACCTGTATGCTCAGGATCACTCATCTGTCTCCATTTTCCCAAAAACCCAGATCATGTTTTTAAATCAAATGTGATAACTGAATTTTTTTGATCCATTTCTAAACTTGACACTGTTCTTGGAAACAGTTTTTCCAAAGCTCTAGGAGTGCCAGAGCACATGTGTATTGGAGGCTGAGTGAGGCAAGCAGGATTGATGGGGAAGCATTAGGTGATGTTCTCAGTGGTAATGGGAAATAAGAGGATGCTCCTGCCCTGCCCTGAAGTCCTCAGTTCCTGGTCCTAAGAAAGCTCTGTCCAAACACCTATGGGCATCAGTTTCCGACCAGTCAATTGCTGCTACCTGTCAGGCTAGAGCAAACTGGGGCTGCAACACCCCCGCCTCTACCAGAATCAAGGCCATAGTGTTAAGCAAGACTCTCACTACTGAGTCCTTGTTTGAATTTGGGTTTCTGTCTCAGTGGTTAGTGATGTCTGCATCTCCCATGATCACTTGCCCACCAGTGTCTTCCCATAGAGCGTCCACAGGCACATTTCTACTCGCCCAGCAATGGCTTTCTTTAGAGCATCTGTGTACACATGTCCACTCTCCCCACCCATGTCTTTCCTGTGAGAACCATGAGCTCATGCTCACTTGCCCATTGGTGTCTTCTTAGGGGGTGTTTGTAAGCATGTCTACTTCCCTCCAGTGTCTCAGAACATCCGTGAGTGCATGCCACTCGCCAGCCAGTGGGTTTCTTTGGGGAGTTCATGCACATATGCCCACGTGCCCACCAGTGTCTGCCAGTGGTGCTGTCTCTCTTCTGTAGTTCAGCAGGCCAGACCTCCTTCTCTACCTCCTGGCTGCCTATTTGTTTTGCTTTTTGCCTCCAGGCTATGTCGTGCAGACCAAATTCTACACTTATTATCATAGGCTGCATTTCTCATAGGTATATGCTCAATTTTATGGTCCCCTCATGGCACTTTTCTGCCTAGCTCACCACCATCTGCAGCACTTAGATTGCATGTTGTCTACTGGGATCCCACCAGACTTTTCTATGCTGTCCCCTAACTGCCCTCCAATACCATGTGTTAGGATGATTTGCTTACACATGGGTCTCAGGAGCTTGTCAGCCCAGGAAGGATTAAGGGAGGGATTATGCTTTATCTGTTTTCTTTATCTGTATTCCCAGTGGGAACCACAGCTCCTGGCTGACCCAAAGCTTGGGCTGGATAATGAGCAGTGAGGAGGGGAATGGAGGAAGAATTAAAATCTAACCTCAGTGACTCACCAAAGTAAACATTTTTGTATGTAGAATTTCGGGTGTTTAGCTGCAGGGCACATCTGAGTCATCCCCCAGGTCTAGGCAGAGGTGCTGTAGATGGGGCATGCTATGTGGTGTGTTTGAGCACATGCAGGTCACCTCCTCCTTCTTAAGCCAGTTCTACCTACCGCTCTGATCATGTCAAATCCTCTTTCTCCAACCTCTTACCGGTTGATTTGTGTTGGCTCAAGGCCTGCAGAAAGCCGTGCATGGGGGTGTAAACATTGGCAAACACTTCATGGCATTACGAAGCACGGAGACCAAGCAGTAATTTCCATTTTAGTAAATTAATGGTCTGGGTGAGGGTGTGCTCAGGAGGATTACAGATGGGCAGCAGATGGTGAGAGAGAGCAGGAGGGGTGTGCCAAGTTGCTGCCCTGGTGATGTGGGCCCCTGTCTTTTGACAAGATTAAAACAACAGCAAGCTAAAATTGGTTAATAGTTCAGAAGCCCATTGGCTGAATAAGTAAGACATTCTTGGGTGTCCTGCCTGCCACTCGGCATATTTCCACTGCCTATCATCCTCCCTTAGGAGAAACCAGCTCTGCATTTGAGCATGTCAACTGGTAATCCTCAGTAGTGACACCGAAGGGCAGTTTGTGTAACCACATCAAGATCCAGGTCATCTGGGCTTCAGTTCCATGTTTGTGATGCCATTGCCCCAATGGCCTGAGGCATATTTCTGCTTTTGTGTCCAAGTGATAATACCATCATGCCATCCTCTATGGTTTCAGTCAGGCCTTGAGCAGTTCTTATAGGAAATATGTAGTGAACTGTATAAATCACTTATCTGAATAAGTGATTTGTGAGAATCCATGAATTCTCTGAATAGGTAGACCCCACAGTCTTCACGTCTAGGGGCCAGTTTGCCCTCGGATGCCATTCAGTGCAGAGAGCTTAATGATGTCCTGTTGCTTCTTTCCCATAG
Seq C2 exon
GTGATCGACTTGACCCCACAGCTGTGAATATCCTGCAGCAGATCATTGAACTGGGTTCAGAGACTCACGATGCTGCTGCCGTGGCCTCCGTGGTTGCCATGGCGCCTGGGACAGTGACTGTTGTAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025140:ENSRNOT00000068291:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.452 A=NA C2=0.131
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]