GgaINT0101924 @ galGal3
Intron Retention
Gene
ENSGALG00000016207 | ZFAT
Description
NA
Coordinates
chr2:148242957-148245261:-
Coord C1 exon
chr2:148245135-148245261
Coord A exon
chr2:148243088-148245134
Coord C2 exon
chr2:148242957-148243087
Length
2047 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
CTTACTGTCTTTCTGATAAGGTG
3' ss Score
7.88
Exon sequences
Seq C1 exon
TTAACTGCTGAAGTTTCTGAAGAAGCGTCTACTCAGTATGTCCATATCACAGAGGCTGGAGAAGATGATCAGGGTACTCAGGCTGCTGTAGCTGCATTACAGAACCTTAGATACACGTCTGAAAATG
Seq A exon
GTAAGTTACCTTTCTGGGAGTTGGAACACCAAATATGTATTTTTTCTCATAAATATCTAATTATTTTCAGTATACTGGGCAATATATGATCACTGTGAAACAATTAAAAATGCTGAAATTTGTCATCCAGAACTTCTTGGTAGTTTATATTTTTTTCTTGGAGGGTAGATAATAAGTGACCATTCATAATGAATTTCTGTGTCCTTAAGTCATTAATACTTACCACGCTCTACTTTACATTTTATTATTAGATGTGTGGAATTTCATGCCTGTATTATTCAATATATTGTGAACTCAGCTGCCTTGGCAAAGCAGATGGTGTGTATCAAATGGCAGTTCTCTAGCTATCATTTTTCTTCCTGCTTAAATCAGCCATCCTGCAGAACTGACACAGTGGAATACTTCATTTACCATATTCCTGAAGCAGTACAACCAAACTTAATTCTGATGGTACAGAAAGCAGAATGAACTATTCAGTATCACATTGGACCAGAAAAAGAGGAATTAGATGAGAGTGATAAGTCAGAAGCAATAACAACTGTAAGAAGAAACTCTCAGGTCTAAGAGAGTGTTAAAACAGAGACTAGAATCAGTGTTTATATATTCTGAATTTGTGTGTGTAAATAAATGCAGTGACTGCCAGAAGAGAGCATTTTACCATTGCTATGAACTGTATGGTTCATAATACAGATAGTTTCACAAGCTCTCTTTTTTTTTTTTTGGCATCTCCAAGCATGTCACAGTTCCATTATGTAACTGGCACTTTCTGTATATTATTTTACTTTAATAAGTGGGAATTCAGAATGAGTAAAAATATCTTGAGAAAATTTCTTAAGCTATAATATATTTAAATTAAAGTAAGCATGATCATGAAATATGCTGTATATAACAGTTTTGATTTTAAGCATGAGGCAGTAATTTTCAAAGTAGAACGATTTACTTTAATCATCTAACTTTTCCCTCTAGGTATAAAACCTAGTAGTTTATACCAGTTATGTAACTGAAGGCAGCTATGTAGGAAAAAATTAAAGCAAGAAAACATTTTTCAGTTCTCGGATAAAATTGCATTTCATTTGGATAACAAAATATAACTACTTAGTTTGAAATTAAATGATCTGAGCTAGATTCCCACCACAGTATCAGTTTGTAAAGGCTGGGGGTTAAGACTTGAGCTTTATTCCATTGACTCATTCCTTTGGGCTTCTTTCCTAGCTCCAGCAGTGATTTCAGCAAATTAAAGCAGCTTTATCATGACCTTGAGAGTTTTCCTCCCTTTCTGACATCCATCATGCTGCTGCTAATTATATGGGCATGGCAGACTACAGGAGGGGGATTTCTGTTCCTGCATGTCACAAAACATTCTTCAGCAGCTATCTTTTTTACATTTCAGGAGGAGTGAAAGTATATAACTTTTTTTGTAAACTTGCCTTTCCTTTAGTAGAATTGAACACATAAAGGTAATTTAAAAATGTGACAAACATGTTGTGATCCCATACTTACAATGTAATAGGCATTGTTTCTCTCAAGAAATTAACTTTTTCACTTCAGCACATTAGTGATAATGTGTTTTAGGTTGAGAGGTGTTGCAGACATTCAGACAGATGATAAACACAGGTATCTTATATACCAAACAGCTGTCTTGGTTATAGGTATAGAGTTCAGATTCTATTTAATATGAATGTCTGGCAAATACACATTTGGATTTGTATAGTCTTGCAGCTGCCTAATATACAGTTACTGCTGTTAGTTTTATCTATTGTTTGTTTAGTCAATGTATTCTTTTTGATCTCTTTAAAATAGTCATAAAAATGAGCAGTGTGGTTTCACTTGCTGATACACACATTCCTCAGGCAAATTTATTTTGTGAATACTTTCATCCTGTAGATCTGTTATTAAAGTGTCATGCTAGTGAGCTGTTTGAATTTACAGACAGCACTATGTATCAAGGTTAAAGCATGAGGGGAAAGAGTGTCTCTGGCAGTTAGGTTCACATACCCTTAGGCCTGTTTTACTGTAATGATCTTATACTTACTGTCTTTCTGATAAG
Seq C2 exon
GTGAAAGACTTGATCCAACAGCTGTAAACATTCTACAGCAAATCATTGAGTTAGGATCGGAAACCCATGATGCCACTGCAGTTGCTTCAGTAGTTACCATGGCACCTGGAACTGTGACAGTAGTAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016207:ENSGALT00000026126:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.570 A=NA C2=0.136
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]