MmuINT0178435 @ mm9
Intron Retention
Gene
ENSMUSG00000022335 | Zfat
Description
zinc finger and AT hook domain containing [Source:MGI Symbol;Acc:MGI:2681865]
Coordinates
chr15:67933033-67936641:-
Coord C1 exon
chr15:67936518-67936641
Coord A exon
chr15:67933164-67936517
Coord C2 exon
chr15:67933033-67933163
Length
3354 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
3' ss Seq
CTGTTGCTTCTTTCCCATAGGTG
3' ss Score
12.52
Exon sequences
Seq C1 exon
CCAGCAGCAGAGACTCCCGAGGAGCCCTCCACCCAGTATCTCTACATCACTGAAGCTGAAGATGTTCAGGGGACACAAGCAGCTGTGGCTGCACTTCAGGACCTGAGATATACCTCCGAGAGTG
Seq A exon
GTGAGGACATACCTGGTTTTATTTCTCACTTCTGTGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTATTAGGTATTTTCTTTATTTACATTTCAAATGTTATCCCCTTTCCTAGTTTCCCATCTGAAAATCCCCTAATCTCTCCCCCTGCTCCCCAACCCACCCACTCACATTCCTGGCCCTGGCATTCCCATATCCTGGGGCATAGAACCTTCAAAGGACCTAGGACCTCTCCTCCGATTGATGACTGACTAGGCCTTCCTCTGCTACATATACAGCTAGAGCCACAAGTCCCACCATATGTTTTCTTTGATTGGTGGTTTAGTTCCAAGGAGCTCTCGGGGGGGGGGGGGCGGGGGAGGGTACTGGTTAGTTCATATTGATGTTCCTCCTATGGGACTGCAAACCCCTTCAGCTCCTTGAGTACTTTCTCTAGCTCCTTCATTGGGGACCCTGTGCTCCGACCAATGGATGATTGTGAGCATCCACTTCTGTATTTGCCAGACACTGGCAGAGCCTCTCAGGAGACAGCTATATCAGGGTCCTGTCAGCTAGCTCTTGTTGGCATCTGCCATAGTGTCTGGGTTTAGTGGTTGTTTATGGGATGGATCCCCAAGTGGAGCAGTCTCTGGATGGTCATTCCTCAGTCTCTGCTCTGAACTTTGTCTCTGTAACTCCTTCCATTGGGTATTTTGTTCCCCCTTCTAAGAAGTATTCTGAGCTTCTGGGCTAATAACCACTTATCAGTGAGTGCATATCATATGTGTTCTTTTGTGATTGGGTTACCTCACTTAGGGTGATATCCTCCTCTGTGTTTTTCTTTATGTAATAAATAAACCAGCATGTCTTGCTTCAGAATGACCCTAGCCAGAGTGGGGCCTACGTAGCTCAGTCTTATTTCCAGTGCAGCCTTAGGTGTGGGCAGTCTTACCATTCTTACTTATTTGCAGTACTATGAACTATGTTCACTGAACATAGTTGGTTAAGAGTCCTCTAGGTCACAGAATTGGAGTCTGGTTCTCCTGACTTACCTCAAGGCAGCCCTACCTATGACCTCATGCAGAGTCAGTCCAGAGTGTCCAGGCAGGTGATAACAGTGGGTGGCATAGGATGTAATGTACCAATGGATCACCCCAGGCATACAAATATACACCTGTGTGCTCAGGACCACTCATCTGTCTCCATTTTCCCCAAAAAGCCAGATCATATTTTTAAATCAAATGTGATGACTTTGAATTTATTTTATCTGTTTCTAAACTGGACACTGTACTTAGAAACAGTTTTCCCAAAGCTCTAGGAGTGCCAGAGCACATGCATATTGGGGGCTGAGTCAAGCAAGCAAGATTAATGGGAAAGCATTAGGTAAGAACAAATGGTAATGGAAAATAAGTTCTCAATCCCGGGTCCTTAAGAAAGCTCCATCCAAACACCTATGGGCATCTGTTTCTGAGCAATTAACTGCTGCTGCCTACCAGGCTAGAGCAAACTGGGGCACAGCACCTTCATTTCTACCATAGTCAAGGCTAAGCTGTTAAGCAAGACTCTCATCACTGAATCCTTGATTGAATTTGTGTTTCTGTCTCAGTGGTTAGTGATGTCTGCATCTCCCATGATCACATACCTATTTTCCCATTAGTGTCTTCCCATAGAGTGTCTACTAGCCCAAAAATGTCTTTCTATAGAGCTTCTATGTACACATGTCCATTTGCCCACCCATGTCTTTTCTTAGAGAATCCATGACTGTGTGCAATTTTCAACCAGTGTGTTTTCTTGGAGAGTCCATGAGCATATGGCCATTTTCCCAATAGTGTTTTTTCTTGGAGAGGTGATGTGCACATGCCCACATGCCCACCAGTGTCTGCCCAGGGTGCCTCAGATGCTGTCTCCTCTTTGTCGCTCAGCAGGCCAAGCCTCCTCCTTCAACTCCTGGCTGCCTGCTTGTCTTGCTTCTTGCCTCTAGGCTGTGTTGTGCAGAACAAACTCTGCAGTTATTCGTGTAGGTTGCATTTTTTTATATGTATATGCGCTATTTTGTGGTCCCCTCATGGCACTTTTCTGCCTAGCTTACCCTCATCTTCAGCACTTAGCTTGCATGTCACCTGCTGGGATCCCACTAGACTTTTCTATACTGTCCCCTAACTGTCCTCCAATACCATGTGTTGGGCTGATTTGCTTACACATGGGTCTCTGGAGCCTGGCAGCCCGGGAAGGATTAAGGGAGGGATTATGCCTTATCTGTTTTCTTTATCTGTATTCCCAGTGGGAACCACAGCTCCTGGCTCACCTAAAGCTTGGGCTGGGTAATGATCAGTGGGGAGGGCAGGGTAGGAAGAATTAAAATCCAACCTCATTGACTCACCAAAGTAAACATTTTTGTATGTGGAATTTAAAGTGTTTAGCCACAGGGCACTTCTGAATCATCCCCCAGGTCTAGGCAGGTGTGCTGCAGAAGGGGTTGGGGTGGGGGGAGTACTATGTGGTGTGGTGTGAGCATATGCAGCTCACCTCCTCCATCTTAGGCCAGTTCTACCTACTGCACTGATCATGTCAGAATTCTCTCTCTCCAGTCTCTTACTGGTTGATCTGTGTTGGCTCAAGGCCCGCAGAAAGCCGTGCATGGGGGTGTAAACATTGGCAATCATTTCATGGCATTATGAAGCACAGAGACCAAGCAGCAATTTCCATTTGAGTAAATTAATGATCTGGGTGAGGGTGTGCTCAGGAGGATTACAGATGGGCAGCAGATGGTGGGAGAGCGCAGGGAGGGTGTGCCAAGTTGCTGCCCTGGTGATGTGGGCCCCTGCCTTTTGACAAGATTAAAACAACAGCAAGCTAAAATTGTTTTATAGTTCAGAAACCCTGGCTGAATGAGGAAGACATTCTTGGGTGTCCTGCCTATCACTCGGCATGCTTCCACTGCCCATCTATGATGCCCTTAGGGAAAACCAGCTCTGCATCTGAGCATGTCAGCTGGTAATCCTTGGTTGTGACAACAAAGGGCGGTTTGTGTAACCACATCAAGATCTAGTTCATCTGGGCTCCAGTTCCATGTTTGTGGTGCCATCGCCCCCAATGACCTGGGGCATATTTCTGCTTTTTGTGATCAAGTGATCATGCCATCATGCCATCCCCTTATGGTTTCAGTCAGGGCTTGAGCAGTTCTTGTAAGAAATATATAGTAAGCTGTAAAGTATTCTCTGAATAAGTGATTTCTGAGAATCCATGAACACTCTGGAATAGTTATACCCCCATTGTCTTCACGTCTAGGGGCCAGTTGGCCCTTGGATGCCACTCAGTGCAGAGAGCTTAATGGTTCTGTTGCTTCTTTCCCATAG
Seq C2 exon
GTGATCGACTTGACCCCACCGCTGTGAATATCCTGCAGCAGATCATTGAACTAGGTTCGGAGACCCACGATGCTGCTGCTGTGGCCTCTGTGGTTGCCATGGCGCCCGGCACAGTGACTGTTGTAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022335-Zfat:NM_198644:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.452 A=NA C2=0.152
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: