DreINT0179334 @ danRer10
Intron Retention
Gene
ENSDARG00000005216 | zgc:158328
Description
zgc:158328 [Source:ZFIN;Acc:ZDB-GENE-070112-1202]
Coordinates
chr15:35450637-35453865:+
Coord C1 exon
chr15:35450637-35450768
Coord A exon
chr15:35450769-35453736
Coord C2 exon
chr15:35453737-35453865
Length
2968 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
TTTGTCTCTCTGTCTTTTAGCTT
3' ss Score
11.39
Exon sequences
Seq C1 exon
TGTGTGAGACGGGAGTGTTTGGGGACGACTGCAGTGTGAGCTGTGAGGACTGTGTTAATGGAGGAGTCTGTGCAGCAGAGAAGGACCGCTGTGTTTGTCCACCCGGCTGGACGGGACTCATCTGTAATGACA
Seq A exon
GTGAGTGTTTTTATTTTCTGTTATTAACACTTAAACAATTACCTTTGCTGCTTGTTCAAACGACTTATTTAAAATGACTAATGACACAATTTTTACGTTTTTTTGGGGGGGCAACTTAATTTTTTATGTTCAATCCACTTAAATTTGTAAAAGCGATTAAGTAAACTTAATCAATTTGTGTTGGGATAACGTAAAGGGATTGTGTGGAGCCCAGCATTTTTTTTTTTTTTTTACAGGGAATGAATTCTAACTTCAACTGAAACCTTGGAACCCTGTAAAAGTTAGGTCTTCCATATTTTTCCTATTGGGGGTTGGTAGATGTTAAAATTTGATTGGCTGAAGGCTTCTATTTTAATTGGAGGCAACGAGTTTGACCTGAGGATTAGGGTGTTATTCGGATTCCAGCCCCCAAAGACCAGGGTTGCCAGGTCCAAGAGAATTTTTCAGCCAAATGACAACCTAAAAGCAATAAAAAGTAGACCAATATTTTTCTTAATCCAACCAAAGTGAAATACTGAACTCCCACAAAGGGAAATCTTCTCTGATACACCGAGAAGTGTATTACTAATATTAATGTTATCTACCAGTCAGAAATTAGCCGGTTTGTTGAGTGGTGTGATATAAATAGGCTAAAAATAATAAGACAACAGGACATACTAAGAAAACAGAAGAGCTAGTATTTGACCCAAAGTGTATAGGTGACCATTGTCAAGTGGTTGTACACGACCATCCTATGACCTATAAGTACTTGGGGAATTTACATCGACATATCTTTCACATGGAAAACACATTGAGTTGGTTTGTTCTCGTTTACATCAGAGATTGTATTTTTTACGGAGGTTGCATCTTTTTGGAGTTAACAAGAAGCTCATGATGTTGTTTTTAAAGCAGTTCTTCAAAGCATTGTTAGATATGGATTCACAGTGTGGTTTGTCAACCTATCTTTTCAGTTTAAATCTAAGTTGATGCATCTCTTAAAGACAGGATGAAAAATTGTTGAATATTTTAAACCTCCAGCTTTATATGAGAATTGTGTCCTCAATCAGGTGGAAAGAATTGTGAACGAACAAACTCATTCTTTTGTTTTCACATTTTGAACTGCTTCCCTCTGATAAAAGATATAGAGCCCCAAAGTGTAGGTTAAACTGTGACAAGAAATCCTTTGTACCCGTTTCAGTGGGTTTATTTAACAAGAGTCTATCTTAATTAGCATTATACATTTTGTAACTGCTGTATTTTATGTTGTTTTTATGGAATTTCTGCAGCAATATGGTGATGCCTATCACAAATTTCCTGTTAAGGACAATAAAGTTTACTACTACTACTAGTTGTAGATATAGTAAACTTGTTAAAAGTATTGACTGACTTTCCGCACACCAAATAACTCTTCTAAGTACCTTTCTCAGATGAGGGTGTATAACTGACATTCTGCTCATTTAATATGTGGCGTGTCATCAGATGACTTTACTCACTCACTTGCAGCTGTTTTGGGGTTGCCAGGTATGCATACCAAGATAAATATTCATTAAGAAATGATGGCATTTGTATTTTGTATTCAAGTGAAAGAAACATTTTGGCTGCTGCAGCACATCAGGAAAGTATCCCCAAAAAATAAACGCTACCTTATTTTTTTGTGCAACTGCATTTAAAAAAAAAGCCTAATTTTGTGGAAAAACCGGGACCACCAAACACACTAAAATCTTACCTGAAATTAAAGTCAAAATAGAAAATAAAATAAAAAAACACAAGTAATTGTGTTGAATGCAAATGTTTTATAGTTTGTGTGTGTGTGTGTCGAGACCGGAAAACCCTACAAGACTTTTAATCGATTTTAACCCTTATGTGCTGTTGGGGATGTTTTTATCCACTCTGGGGGGATTTTAAGTTTTGTTTGGCCATAACCATTTCTGTGTTTCAGCTAGCCGGATGATTTTTGGTGACAAATCTTATTTTGAGACATTTAGGGAAAATGCTTTAAAAAAAAAACTCTATACAAACAAACTATACACTTTGGGCAAATTTTCTACCCTTTTGTTATGATAGAGATGAAAATATTCTCTAAATTAAATTGCTGTAAAAATGCTGCCTTTTGATGTTGAGACATATTGACTAAACAAAAAGGTATGTGGATTTGCATGCATTATGCTGGTCATTTGTTGGTGAGAAGAGCCGCAAGCAACATTAGAAAGGGGTTTACTTGTACCAAAGTTTTAGAATTGGTTATGGAGCCTGACCACAAGGGTTAAAAGACTAAACATTATGTACTTACGGACTATAAAATTGGAAAAAAAATAATAATAAAAACAATAATAATAATAAAAATATTCAAATGCATTGTACAATTAATGTTATTTTACCAGACTTATATGACCACAAAGTCAACAAGAAACATGTTACTTGTTTTTACGAGATGCCTGACAACTGAAAATAATTTGTCTTTACATTTGACTTTACATTTTGAAGAAATGTCATCAACAATGAATGTTTTACTCAGTGTTGAAAACAGTAAAAGCATTTTATTATAACCTAACTGTAAACTCTTATTTGTTTCACATAAAAATGTATGTTAATGACAGAACATTAGACTCAGCATAATAGCTTAATAACACACACAGCACATTTTTTTACTTCTTCTCTCCATCTATCTGACATACAGCTCCCAATCTTGTCATATTTACCCTTAAACACAAAAATCCCATCAAGCCCCTTTGGGTTCGGTTCAGTGGCTCAAAACGAAGTATTCCTATATAACCCAACTAGTTTATAGCCCAGCATGTTGAAGAGCTATAAGAGCACCTCCAGACTCATCACTGTGCGCTATATACATGTACATTTTTTCCATGTAGTCTCGTTTTTTTAATTCACCCTAGAGTCAACAGAAGTATGCTGCTGTATTTCTTTTTGGTTCCTCTGAGGACACTAAACATGTATTTTCTTATGATTCTCTCTTTGTCTCTCTGTCTTTTAG
Seq C2 exon
CTTGTCCTGAGGGCACATATGGTGCTGAGTGTAACAGTCTGTGTGTTTGTAAGAACGGGGGCCGCTGTGACCCAGTGACCGGGAAGTGCTTGTGTCCTCCAGGGGTCCATGGTCTGCACTGCGAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005216:ENSDART00000066737:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=68.9)
A:
NA
C2:
PF0005319=Laminin_EGF=PU(71.7=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]