DreINT0179343 @ danRer10
Intron Retention
Gene
ENSDARG00000005216 | zgc:158328
Description
zgc:158328 [Source:ZFIN;Acc:ZDB-GENE-070112-1202]
Coordinates
chr15:35441795-35442122:+
Coord C1 exon
chr15:35441795-35441920
Coord A exon
chr15:35441921-35441999
Coord C2 exon
chr15:35442000-35442122
Length
79 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGT
5' ss Score
9.54
3' ss Seq
GTATCCTGTGTTCTCCTCAGTGA
3' ss Score
8.95
Exon sequences
Seq C1 exon
CGGTGAACTCTTGCTCAGTGAAGAATGGCGGATGTGAACACAAGTGTGTGGATTTGGGAAACGAACAGTACAAGTGTGAATGTCGAAGCAACTACCAGCTCAAGAGAGACGGAAAGCACTGTGAAC
Seq A exon
GTGAGTCGACATGCATGCGCCATCTTTGACTAACGTCCCGTTGTGATGTTTATGAGGGTGTATCCTGTGTTCTCCTCAG
Seq C2 exon
TGAAGGACCCCTGTAAAGATCATAACGGCGGATGTTCTCAAATCTGCACTGATGTGAATGGACTGGTTCAGTGCAGCTGCAGAACAGGATTCACATTGGCAAATGACCTCAGGAGATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005216:ENSDART00000066737:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=86.0)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCGGATGTGAACACAAGTG
R:
GCTGCACTGAACCAGTCCATT
Band lengths:
178-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]