DreINT0180448 @ danRer10
Intron Retention
Gene
ENSDARG00000095217 | zgc:66156
Description
zgc:66156 [Source:ZFIN;Acc:ZDB-GENE-040426-1554]
Coordinates
chr22:247424-247664:-
Coord C1 exon
chr22:247572-247664
Coord A exon
chr22:247488-247571
Coord C2 exon
chr22:247424-247487
Length
84 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
CTAAAAATTTCAATCTATAGGGT
3' ss Score
6.48
Exon sequences
Seq C1 exon
GGGTCACTGGAGGATCAAATCATTGCTGCAAACCCTCTGCTGGAGGCTTATGGTAATGCCAAGACTGTGAGGAATGACAACTCCTCTCGTTTT
Seq A exon
GTAAGTTGCTGCAATCAGATGATAGGCGCTACACAAGTTTACCTCTTTGAAATTCCTTTATGATCTAAAAATTTCAATCTATAG
Seq C2 exon
GGTAAATTCATCAGGATTCACTTTGCAACAACTGGAAAGCTGGCTTCAGCTGATATTGAAACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095217:ENSDART00000075210:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.5=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCACTGGAGGATCAAATCA
R:
AGTTTCAATATCAGCTGAAGCCA
Band lengths:
156-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]