GgaALTA0001093-4/4 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000002364 | SEC16A
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr17:7858666-7860112:+
Coord C1 exon
chr17:7858666-7858864
Coord A exon
chr17:7859935-7860057
Coord C2 exon
chr17:7860058-7860112
Length
123 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
TACTAATATGATCTATTTAGAGC
3' ss Score
3.66
Exon sequences
Seq C1 exon
ACATGACCGATATGACGATCGTTGGAGGTACGATCCTCGCTTTACTGGAAGCTTTGATGATGATGCTGAGCCTCACAGAGATCCTTATGGAGATGAGTTTGATAGGCGCAGTGTTCACAGTGAGCATTCTGGGCACAGCCTCCGGAGCTCCCACAGTGTGCACAGTCACCGGAGCAGCTTCAGCTCTCGTTCCCAACAA
Seq A exon
AGCCAGCTGTATAGAAGTAACCACGATTTAACGGCTAATGCGTATGAAACTACTGCACAGGCAGTGTCACTGCACACAGATTACCCATACGGTGGATATGCTCCTAACTTTGATGGACAACAG
Seq C2 exon
CCTTTTACAGATTATGGCTACTCGACTGAAACTGGATGGTCAGCTGTAGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002364-9-13,9-12,9-11,9-10-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.776 A=NA C2=0.517
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCGATATGACGATCGTTGG
R:
ACAGCTGACCATCCAGTTTCA
Band lengths:
243-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]