GgaALTA0001802-2/2 @ galGal4
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C245]
Coordinates
chr23:5394536-5395022:+
Coord C1 exon
chr23:5394536-5394699
Coord A exon
chr23:5395008-5395010
Coord C2 exon
chr23:5395011-5395022
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACG
5' ss Score
9.65
3' ss Seq
TTTATTTACGCTTAACAAAGCAG
3' ss Score
-1.47
Exon sequences
Seq C1 exon
GAAAATCCTTGACCCAGGCCGCCCCCCCCACCATGCCCATCATCTCCCAGTCGGAAACCAAGAACCCCCGCATCAATCAGCTCTCAGCCCGCTGGCAGCAGGTCTGGCTGCTGGCCCTGGAGCGGCAGCGGAAGCTCAACGATGCCCTGGACCGACTGGAGGAG
Seq A exon
CAG
Seq C2 exon
CTATGCCCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693-136-150,136-149-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.382 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(35.6=85.5)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]