HsaALTA0004910-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000127603 | MACF1
Description
microtubule-actin crosslinking factor 1 [Source:HGNC Symbol;Acc:13664]
Coordinates
chr1:39924758-39925504:+
Coord C1 exon
chr1:39924758-39924921
Coord A exon
chr1:39925490-39925492
Coord C2 exon
chr1:39925493-39925504
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
TTTATTTGTGCATATCAAAGCAG
3' ss Score
0.5
Exon sequences
Seq C1 exon
GGAAATCCCTAAGTCAGCCAACCCCTCCTCCCATGCCAATCCTTTCACAGTCTGAAGCAAAAAACCCACGGATCAACCAGCTTTCTGCCCGCTGGCAGCAGGTGTGGCTGTTAGCACTGGAGCGGCAAAGGAAACTGAATGATGCCTTGGATCGGCTGGAGGAG
Seq A exon
CAG
Seq C2 exon
CTATGCCTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127603-124-127,124-126-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.372 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134991=EF-hand_7=PU(1.1=16.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)