MmuALTA0010403-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000028649 | Macf1
Description
microtubule-actin crosslinking factor 1 [Source:MGI Symbol;Acc:MGI:108559]
Coordinates
chr4:123368821-123369931:-
Coord C1 exon
chr4:123369805-123369931
Coord A exon
chr4:123368833-123368835
Coord C2 exon
chr4:123368821-123368832
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
TTTATTTGTGCATATCAAAGCAG
3' ss Score
0.5
Exon sequences
Seq C1 exon
AATCCTCTCACAGTCTGAAGCAAAAAACCCACGAATCAACCAGCTCTCTGCCCGGTGGCAGCAGGTGTGGCTGTTAGCCCTGGAGCGTCAGCGGAAGCTGAATGATGCCTTGGACAGACTGGAGGAG
Seq A exon
CAG
Seq C2 exon
CTATGCCCGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028649-168-173,168-172-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.330 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(7.4=16.3)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types