RnoALTA0022814-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000016047 | Macf1
Description
microtubule-actin crosslinking factor 1 [Source:RGD Symbol;Acc:1306057]
Coordinates
chr5:141057866-141058989:-
Coord C1 exon
chr5:141058826-141058989
Coord A exon
chr5:141057878-141057880
Coord C2 exon
chr5:141057866-141057877
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
TTTATTTGTGCATATCAAAGCAG
3' ss Score
0.5
Exon sequences
Seq C1 exon
GAAAGTCCTTGAATCAACCCACACCTCCACCCATGCCAATCCTCTCACAGTCTGAAGCAAAAAACCCACGAATCAACCAGCTCTCTGCCCGCTGGCAGCAAGTATGGCTGTTAGCCCTGGAGCGCCAGCGGAAGCTGAACGATGCCTTGGATAGACTGGAGGAG
Seq A exon
CAG
Seq C2 exon
CTATGCCCGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016047-143-152,143-151-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.382 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]