GgaALTA0001802-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000003693 | MACF1
Description
NA
Coordinates
chr23:5711883-5712369:+
Coord C1 exon
chr23:5711883-5712046
Coord A exon
chr23:5712355-5712357
Coord C2 exon
chr23:5712358-5712369
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
TTTATTTACGCTTAACAAAGCAG
3' ss Score
-1.47
Exon sequences
Seq C1 exon
GAAAATCCTTGACCCAGGCCGCCCCCCCCACCATGCCCATCATCTCCCAGTCGGAAACCAAGAACCCCCGCATCAATCAGCTCTCAGCCCGCTGGCAGCAGGTCTGGCTGCTGGCCCTGGAGCGGCAGCGGAAGCTCAACGATGCCCTGGACCGACTGGAGGAG
Seq A exon
CAG
Seq C2 exon
CTATGCCCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693-101-101,101-100-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.382 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(35.6=85.5)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]