GgaALTA1026455-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000000906 | RALGPS1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:HGNC Symbol;Acc:HGNC:16851]
Coordinates
chr17:10290287-10292350:+
Coord C1 exon
chr17:10290287-10290343
Coord A exon
chr17:10292243-10292247
Coord C2 exon
chr17:10292248-10292350
Length
5 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAC
5' ss Score
5.99
3' ss Seq
TTTTCTTTTTTTCTTTGTAGGGT
3' ss Score
12.29
Exon sequences
Seq C1 exon
ATGTATAAAAGGAATGACTTCATGGCCAATGTGATGGTCACCTCTGCCACTCCAGAG
Seq A exon
GGTAG
Seq C2 exon
TAGCAGCTCAGATTCTCTGGAAGGGCGAAGTTCAGATTATGCCAATAAGAGCTATGATGCTGTTGTATTTGATGTATTAAAAGTAACTCCTGAGGAGTTTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000906-0-2,0-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.066 A=NA C2=0.264
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0061714=RasGEF=PU(4.1=22.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAATGACTTCATGGCCAATGT
R:
TGGCATAATCTGAACTTCGCCC
Band lengths:
92-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]