MmuALTA1030486-2/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000038831 | Ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:MGI Symbol;Acc:MGI:1922008]
Coordinates
chr2:33336513-33340833:-
Coord C1 exon
chr2:33340713-33340833
Coord A exon
chr2:33336616-33336620
Coord C2 exon
chr2:33336513-33336615
Length
5 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
TCTCTTTGCCTTCTCTATAGGGC
3' ss Score
10.54
Exon sequences
Seq C1 exon
GACCTCTCAGACAGGTTATGTCACCAGCAGAGGTGGCGCCGAAGTTCCCTGCGGCCTGGAGACTATGTACAAGAGGAATGGTCTGATGGCTAGCGTGTTGGTCACCTCTGCCACTCCACAG
Seq A exon
GGCAG
Seq C2 exon
CAGCAGCTCAGACTCGCTGGAGGGCCAGAGCTGCGACTATGCCAGCAAGAGCTACGATGCTGTCGTCTTCGACGTTCTGAAAGTGACTCCCGAGGAGTTTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038831-11-8,11-7,11-6,11-5-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.076
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0061714=RasGEF=PU(9.1=47.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATGGTCTGATGGCTAGCG
R:
CTCTTGCTGGCATAGTCGCAG
Band lengths:
98-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types