HsaALTA1028113-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000136828 | RALGPS1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:HGNC Symbol;Acc:HGNC:16851]
Coordinates
chr9:126962225-126965951:+
Coord C1 exon
chr9:126962225-126962346
Coord A exon
chr9:126965844-126965848
Coord C2 exon
chr9:126965849-126965951
Length
5 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
TCTTTCCCTGCTCTCCACAGGGC
3' ss Score
12.29
Exon sequences
Seq C1 exon
GACTTCTCCAGACAGGTTATGTTACCTGCAGAGGCTGCCCTGAAGCTCCCTGTGGCCTGGAGACTATGTACAAGAGGAATGGTCTGATGGCTAGCGTGTTGGTCACCTCTGCCACTCCACAG
Seq A exon
GGCAG
Seq C2 exon
CAGCAGCTCGGACTCTCTGGAGGGCCAGAGCTGCGACTATGCCAGCAAGAGCTATGATGCCGTTGTCTTCGATGTCTTGAAAGTGACCCCAGAGGAGTTTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136828-4-4,4-3,4-2-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.124
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0061714=RasGEF=PU(14.5=22.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATGGTCTGATGGCTAGCG
R:
CTCTTGCTGGCATAGTCGCAG
Band lengths:
98-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains