RnoALTA0032932-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000016910 | Ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:RGD Symbol;Acc:2319500]
Coordinates
chr3:12377109-12380940:-
Coord C1 exon
chr3:12380820-12380940
Coord A exon
chr3:12377212-12377216
Coord C2 exon
chr3:12377109-12377211
Length
5 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
TCTCTTTGCCTTCTCCATAGGGC
3' ss Score
11.53
Exon sequences
Seq C1 exon
GACCTCTCAGCCAGGTTATGTCACCAGCAGAGGTGGCGCCGAAGTTCCCTGCGGCCTGGAGACTATGTACAAGAGGAATGGTCTGATGGCTAGCGTGTTGGTCACCTCTGCCACTCCACAG
Seq A exon
GGCAG
Seq C2 exon
CAGCAGCTCCGACTCACTGGAGGGCCAGAGCTGCGACCATGCCAGCAAGAGCTACGATGCTGTCGTCTTCGACGTTCTGAAAGTGACTCCTGAGGAGTTTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016910-6-3,6-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.172
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0061714=RasGEF=PU(11.6=22.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGCGTGTTGGTCACCTCTG
R:
CGACAGCATCGTAGCTCTTGC
Band lengths:
97-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]