GgaALTA1026548-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000006348 | RAPGEF3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:HGNC Symbol;Acc:HGNC:16629]
Coordinates
chrLGE22C19W28_E50C23:433304-433676:+
Coord C1 exon
chrLGE22C19W28_E50C23:433304-433425
Coord A exon
chrLGE22C19W28_E50C23:433502-433509
Coord C2 exon
chrLGE22C19W28_E50C23:433510-433676
Length
8 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
GTGCTCTTCCCTCCCCGCAGTGA
3' ss Score
11.36
Exon sequences
Seq C1 exon
GAGGTGCTGCTCCGGGAAGGAGCTGGTGGACTGGATGCTGAATGCAGAGCTGGGCATCCAGACGCGAAGCCAAGCCATCGGCGTGGGGCAGGTGCTGGTGGACGGCGGGGTCCTGACGCACG
Seq A exon
TGAAACAG
Seq C2 exon
GAGTGGCATTTCCAGGACAAGGACACCCAGTTCTATCGCTTTGCTGAGTTGGAGCTGAGCCCTGAGCCCCGCGTGGGGCTGCGGGATGCGGAGGAGCTGCTGGAGGCGGTGACCTTCCTGGCACAGCTGGGGCCCGATGCGCTGCTCACCATGGCCCTGCGCAAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006348-12-6,12-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0061016=DEP=FE(57.7=100)
A:
NA
C2:
PF0061016=DEP=PD(22.5=27.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAATGCAGAGCTGGGCA
R:
CCTTGTCCTGGAAATGCCACT
Band lengths:
107-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]