RnoALTA0033025-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000059961 | Rapgef3
Description
Rap guanine nucleotide exchange factor 3 [Source:RGD Symbol;Acc:621869]
Coordinates
chr7:139247430-139248094:-
Coord C1 exon
chr7:139247973-139248094
Coord A exon
chr7:139247576-139247598
Coord C2 exon
chr7:139247430-139247575
Length
23 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
GCTACGCCTTGGCTCCCCAGTAA
3' ss Score
3.82
Exon sequences
Seq C1 exon
GCAGTGCTGCTCTGGCCGGGAGCTAGTGGATGGGATCTTGGCTCTGGGTCTTGGGGTCCACTCACGGAGCCAAGCTGTGGGCATCTGCCAGGTGTTGCTGGATGAGGGTGCCCTTTGCCATG
Seq A exon
TAAAACATGACTGGACCTTCCAG
Seq C2 exon
GACCGAGACGCCCAATTCTACAGATTCCCTGGACCGGAGCCCCAGCCTGCAGGAACTCATGACGTGGAAGAGGAGCTTGTTGAGGCAATGGCCCTACTCTCCCAGCGAGGGCCTGATGCCCTACTCACTGTTGCACTCCGGAAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059961-11-15,11-14-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.228
Domain overlap (PFAM):
C1:
PF0061016=DEP=FE(57.7=100)
A:
NA
C2:
PF0061016=DEP=PD(22.5=28.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGATGGGATCTTGGCTCTG
R:
GTAGAATTGGGCGTCTCGGTC
Band lengths:
118-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]