HsaALTA1006899-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000079337 | RAPGEF3
Description
Rap guanine nucleotide exchange factor 3 [Source:HGNC Symbol;Acc:HGNC:16629]
Coordinates
chr12:47751170-47751520:-
Coord C1 exon
chr12:47751399-47751520
Coord A exon
chr12:47751194-47751216
Coord C2 exon
chr12:47751170-47751193
Length
23 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
CCTGGGCCTCTGCCCCCCAGTGA
3' ss Score
7.28
Exon sequences
Seq C1 exon
GCAGTGCTGCTCTGGCCGGGAGCTGGTGGATGGGATCTTGGCCCTGGGACTTGGGGTCCATTCCCGGAGCCAAGTTGTGGGAATCTGCCAGGTGCTGCTGGATGAAGGTGCCCTCTGCCATG
Seq A exon
TGAAACACGACTGGGCCTTCCAG
Seq C2 exon
GACCGAGATGCCCAATTCTACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000079337-9-22,9-21,9-20-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.256
Domain overlap (PFAM):
C1:
PF0061016=DEP=FE(57.7=100)
A:
NA
C2:
PF0061016=DEP=PD(22.5=28.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCTTGGCCCTGGGACTT
R:
CGGTAGAATTGGGCATCTCGG
Band lengths:
113-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains