MmuALTA1010109-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000022469 | Rapgef3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:MGI Symbol;Acc:MGI:2441741]
Coordinates
chr15:97760697-97761229:-
Coord C1 exon
chr15:97761108-97761229
Coord A exon
chr15:97760702-97760747
Coord C2 exon
chr15:97760697-97760701
Length
46 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
GCCATATCTTGGCTCCCCAGTAA
3' ss Score
5.26
Exon sequences
Seq C1 exon
GCATTGCTGCTCTGGCCGGGAGCTAGTGGATGGGATCTTGGCTCTGGGGCTTGGGGTCCACTCACGGAGCCAAGCCGTGGGCATCTGCCAAGTGTTGCTGGATGAGGGTGCCCTTTGTCATG
Seq A exon
TAAAACATGACTGGACCTTCCAGGACCGAGATGCCCAATTCTACAG
Seq C2 exon
GTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022469-13-20,13-19,13-18-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.316
Domain overlap (PFAM):
C1:
PF0061016=DEP=FE(57.7=100)
A:
NA
C2:
PF0061016=DEP=PD(22.5=28.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types