GgaALTD0002747-1/2 @ galGal4
Alternative 5'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NHH4]
Coordinates
chr17:4718570-4724386:+
Coord C1 exon
chr17:4718570-4718606
Coord A exon
NA
Coord C2 exon
chr17:4724333-4724386
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATA
5' ss Score
4.18
3' ss Seq
CTTTGGTGGTGTGTATCCAGGGT
3' ss Score
5.7
Exon sequences
Seq C1 exon
GGGCTGATAGGAAACCCTGGAGAACATGGACTGAAAG
Seq A exon
NA
Seq C2 exon
GGTGATCAGGGAGGAGCAGGTCTTCCAGGAGATATTGGCTTCCAAGGAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006958-21-17,22-17-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTGATAGGAAACCCTGGA
R:
CCTTGGAAGCCAATATCTCCTGG
Band lengths:
84-92
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]