GgaALTD0002748-2/2 @ galGal4
Alternative 5'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NHH4]
Coordinates
chr17:4739439-4740632:+
Coord C1 exon
chr17:4739439-4739492
Coord A exon
chr17:4739493-4739499
Coord C2 exon
chr17:4740579-4740632
Length
7 bp
Sequences
Splice sites
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
3' ss Seq
TGTTCTTCCTTCCCTTGCAGGGG
3' ss Score
13.26
Exon sequences
Seq C1 exon
GGTGACCGTGGCTCAGTGGGACCCCCAGGCCCTCCTGGAGTCAAGGGGTCGATG
Seq A exon
GTAAGGA
Seq C2 exon
GGGCACCCTGGGATACCAGGAGCAGTGGGTTTTCCCGGCATCCCCGGACCAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006958-33-27,34-27-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCGTGGCTCAGTGGGA
R:
GATGCCGGGAAAACCCACTG
Band lengths:
93-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]