GgaEX0000126 @ galGal3
Exon Skipping
Gene
ENSGALG00000000201 | PLEKHM1
Description
NA
Coordinates
chr27:1497444-1501110:-
Coord C1 exon
chr27:1500487-1501110
Coord A exon
chr27:1499684-1499942
Coord C2 exon
chr27:1497444-1497678
Length
259 bp
Sequences
Splice sites
3' ss Seq
ACTGCTGCTTCTCTTCAAAGGGT
3' ss Score
9.21
5' ss Seq
CCGGTAGGT
5' ss Score
9.39
Exon sequences
Seq C1 exon
GAGCGCTCCCGCCTGCCCGAGTTCTACCAACCCACAGCGCTGCTCCTGGACGCCGAGGAGTGTGAATTCCTCCTGAGCTACCTGCAGGGCTTGTCGTCCCTCACCTTCCAGCTGTCCTACAAGTCGGCGGTGCTCAACGAGTGGACGGTCACCCCGCTGTCCCTCTCAGGGCTGTGCCCCGTATCCGAGCTGCTGGAGCCCCCGGCGGCCGAACCTCAAAGAAAAGCGTCTCTGGGTTCCATCTCCCAATCTTCGGGCTCTGATGAGATTGAAATCCAACCCCCGGCGCTGCCCATCTGCAAGGCGGGCGACAAACCCAAGCGGACGTCGTCCTCGCTGAGCCTGAACACCACGGGTTCGTCACAGCTGTCCTCCAGCCTGGGCTCTGACAGCGTGCAGCCCCACTGCGCCCGCAGCCCCGAGCGCGGCGATGAGCCGCTGTCCTGCGACTCCGACCTGGGCACGGCCACGGCCGAGGACCTGGACAGGTCATTGCAAGA
Seq A exon
GGTGCTCTCCGAGTTCAGGAAAGCTGAGCCGAGTTTCGGTGCCCCATCGGAGCAGCTCATCCCGGCCGTGCTGGGCTGCTCCCCGCCGCCCCCCGAGGACACCCACCCACCACCTTCCCCCCCACCAGCTGATGCCTGCGCTGCTCCCCAGGAGGAGGACAGCATCCCGACCCCACGGCGCGTGGATGGGGGGAAGGAGGGCCGCGTGGTGCGCAGCCCTGCTGCCAAATTCCTCTGCTCCCCGCTGCCGGGCTGCCCG
Seq C2 exon
AATAGGAAGAGTTGGATCTCAGAAGACGATTTCTACAGACCTTCAGCAGGGGAGAGCGATGAAATCCCAGCTGATCCCAACGGCTTTGTGCCGGATGGGGCTGGGGAGGGCCCGACCTCGGGGCTGCTCAGTGCTTTGGATTTGGAAAGGCCGTCCCCACCGCCCTCCCAGGGCCCCAGGCTGTCCCCCGAGCGAGAGCAGAAGGGCTTCAGCGTCGTGCATCGCCGGCAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000201-'3-8,'3-2,5-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.392 A=0.875 C2=0.882
Domain overlap (PFAM):
C1:
PF0275914=RUN=PD(61.9=39.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAATCTTCGGGCTCTGATG
R:
CCCCTGCTGAAGGTCTGTAGA
Band lengths:
308-567
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]