RnoEX6049980 @ rn6
Exon Skipping
Gene
ENSRNOG00000028521 | Plekhm1
Description
pleckstrin homology and RUN domain containing M1 [Source:RGD Symbol;Acc:1308010]
Coordinates
chr10:91468563-91484610:-
Coord C1 exon
chr10:91483984-91484610
Coord A exon
chr10:91475464-91475845
Coord C2 exon
chr10:91468563-91468845
Length
382 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTTTCAATCTTTTAGGGT
3' ss Score
11.21
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
CCTGCACGGTTGTGCGAGTACTATCAGCCCACGGCCCTGCTTCGAGATGCTGAGGAAGCCGAGTTCCTCCTGAGCTTCCTCCAAGGACTAACATCCTTGTCTTTTGAACTCTCCTACAAGTCAGCCATCTTAAATGAATGGACACTCACCCCACTGTCTCTCTCTGGGCTTTGCCCCCTCTCTGAACTGGACCCTCTCACTGTCTCTGGTGCAGAACTGCAACGGAAGGAGTCTCTGGATTCCATTTCCCATTCCTCAGGCTCTGAGGACATCGAAGTCCAACACTCAGGCCATAAGATCCGCAGGGACAGGAAGCTCACCGCCTCTTCCCTCAGCCTGGACACAGCCAGCTCATCCCAGCTATCCTGCAGCCTAAATTCTGACAGCTGCCTGCTCCAAGAGAATGGTCCCAAGAGTCCAGACCACTCTGAGGAACCCATGTCCTACGACTCAGATCTGGGCACAGCAAATGCTGATGACTCTGACAGGTCTCTGCAAGA
Seq A exon
GGTGTTGTCGGAATTCAGCAAAGCCCAGGTAAATTCTGCACCAAGCAGCGGACCAAGCCAAGAGTCAGACACCCCCATGTTCCAGACCCCCCTCTCCCTCCACAGCCTAGCTAACAGCACACACCTGCTCTTTGAAGGATCTGAAGAGCCCTTTCCTGCCCATACATCCTCTGGGACTTCAAGTGGCCACAAGCATCAGCCCCAGGAGAGTCCAGACATGCAGCCGCTAGGCACTGCCCAAGCTGGCCCTGCTGGGAGCACTTCAGACCAGCAGCCATCTAGTCCCGTGGCCGGAGCAGCTGACCAAGGAAGTGAGCCTTGGAAGGCCCTGGAATATGGCAGAGTTGGACCGAAGCTTGTGGTTTCCTCTCCTACGAGTCCG
Seq C2 exon
AAAGGCAAGAGCTGGATTTCTGAAGATGACTTCTGCCGACCTCCCAAGGAGCATGCTCTGAAGAACACTTCAGATCTTTGCATATCTCCTCTGCAAGGGACTCCAGAGTTGAGGACTGCTCTCCACGGGCCGTTTTCTCAAGGACCAAGAAAGAGCTGCTCCCTGGGGGCCTTAGACAAAGCGTGTGTGTCCTCGCTGGACTACAGAAATGCCCAGACAGCTCCATCTCCAGCGGTGACACAAGACCATAAAAACTTCTGTGTGGTGCATCGAAGGCAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028521-'10-9,'10-8,14-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=0.977 C2=0.316
Domain overlap (PFAM):
C1:
PF0275914=RUN=PD(61.9=39.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCAACGGAAGGAGTCTCT
R:
CTTCAGAGCATGCTCCTTGGG
Band lengths:
348-730
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]