MmuEX0035806 @ mm9
Exon Skipping
Gene
ENSMUSG00000034247 | Plekhm1
Description
pleckstrin homology domain containing, family M (with RUN domain) member 1 [Source:MGI Symbol;Acc:MGI:2443207]
Coordinates
chr11:103241348-103256628:-
Coord C1 exon
chr11:103256002-103256628
Coord A exon
chr11:103248272-103248662
Coord C2 exon
chr11:103241348-103241666
Length
391 bp
Sequences
Splice sites
3' ss Seq
GTCTGCTTTCAAACTTCTAGGGT
3' ss Score
8.44
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
CCTGCACGGTTGTGCGAGTACTATCAGCCCACAGCCCTGCTTCGAGATGCCGAGGAGGCTGAGTTCCTCCTGAGCTTCCTGCAAGGACTAACATCCTTGTCCTTCGAACTCTCCTACAAGTCAGCCATCTTAAATGAATGGACACTCACCCCATTGTCGCTCTCTGGGCTTTGCCCCCTCTCTGAACTCGACCCTCTCACTACCTCTGGTGCAGAACTACAGCGGAAAGAGTCTCTGGATTCAATTTCCCATTCCTCGGGCTCTGAGGACATCGAAGTCCAACACTCAGGCCATAAGATCCGCAGGAACAGGAAGCTCACTGCCTCTTCCCTCAGCCTGGACACAGCCAGTTCATCCCAGCTGTCCTGCAGCCTAAATTCTGACAGCTGCCTGCTCCAAGAGAATGGTCCCAAGAGTCCAGACCATTCTGAGGAACCCATGTCCTATGACTCAGATCTGGGCATGGCAAACACCGATGACCCCGACAGGTCTCTGCAAGA
Seq A exon
GGTGTTGTCGGAATTCAGCAAAGCCCAGGTAAATTCTGCACCAAGCAGCGGACCAAACCAAGAGCCAGACACCCCCATGTTCCAGACGCCCCTCTCCCTCCATAGCCTAGCTACCAGCACACACCTGCACTTTGAGGGATCTGAAGAGCTCTTTCCTGCCCACAAATCCTCTGGGACATCAAGTGGTGGCCATAAGCATCAGCTACTGCCCCAGGAGACCCCAGACGAGAAGCAGCTAGGCACTGCCCAAGCTGGCCCTGCACAGAGCACTTCAGACCAGCAGCCTTCTAGTCCTGTGGGTGGAGCAGCTGGCCAAGGGAGTGGCCCTTGGAAGGCCCTGGAGTATGGCAGAGTCGGACCGAAGCTTGTGGTTTCCTCTCCTACGAGTCCG
Seq C2 exon
AAAGGCAAGAGCTGGATTTCTGAAGATGACTTCTGCCGACCTCCCCAGGAGCCTGCTCTAAAGAGCGCTGCAGGTCTCTGCACATCTCCTGTGCAAGACACTCCAGAGTCAAGGGCTGCTCTCCACGGGCCTTTTTCTCAAGGACCAAGAAAGAGCTGTTCCTTGGGGGCATTAGACAAAGCATGTGTGCCCTCACAGGCCTGTGGAAATGCCCAGCCAGCTCCAGCCCCAGCTCCAGCTCCAGCCCCAGCCCCAGCCCCAGCTCCAGGGGTGACACAAGACCATAAAAACTTCTGTGTGGTGCACCGAAGGCAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034247_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.314 A=0.992 C2=0.589
Domain overlap (PFAM):
C1:
PF0275914=RUN=PD(61.9=39.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCAGGCCATAAGATCCGC
R:
GAGAAAAAGGCCCGTGGAGAG
Band lengths:
357-748
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: