DreEX0056308 @ danRer10
Exon Skipping
Gene
ENSDARG00000099954 | plekhm1
Description
pleckstrin homology domain containing, family M (with RUN domain) member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2752]
Coordinates
chr12:4906586-4912014:+
Coord C1 exon
chr12:4906586-4907224
Coord A exon
chr12:4909891-4910365
Coord C2 exon
chr12:4911846-4912014
Length
475 bp
Sequences
Splice sites
3' ss Seq
AAACTCCTGTTTGTTTTCAGAGA
3' ss Score
8.52
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
AGCACCTACTATCAGCCCGGGGCTCTTCTGCTGGACCCGGAGGACCGAGAGGTGCTTCTCACCCTCCTGCAGGGCTTGGCTTCACTGACCTTCCAGCTTTCCTACAAATCTGCTGTGCTCAATGAATGGACCAACACGCCGCTGGTCCTTGCAGGTCTTTGCCCTCCAACTCCTGCCGACGAGCAGCATCTTGGTCCCAAACGCAAGGAGTCCTGGGATACGGTGTCCCAGTCATCCGGCGGCTCTGGAGGCTCGGATTGGACTCCCGAATCGCTCCAGAGGGAGACGAGGAGAGATCAGATTGATGGCTGTGATCCCAGCACTCCGCTGACCTCCTCAAACCTAAGTCTGGACACCGTGTCGGGGTCTTCGCATCTGTCCTCCAGCCTGAGCTCTGACAGTCTGCTGCAAGGCCAGGAGCTCAGGAGCCCAGAGAAGGAGCGCTGGAGCTGCGACTCCGAGATCAACCACAATGAACAGCAGAAGATCACGGCTACAGA
Seq A exon
AGAGAGCCTGATGAAGGAGGACATTGATGTGTTCATACCAGCTCCAGACAATCTGACTGACACGCATTCTGTCAACGAGCACACGCACATACCTGACGCCTCACTGACATCAGCACAGGACACGCATCACTCGCACATCACAGAGCAATCTGTAGAGAACATATCAGTGGAGACGAAAGAAGAAACAATAGAAGAATCTGAGATTATAGTTAAAAGCACAAGACTTAAAGCTAAAAATACTGTGAGTGAGACTGCAGAGAAGGAGAAGAAGAGGGAGAGCAGAGACTCATCTGTTGATCCTCCTTCAGTTTCTGCTTTAACAGAGACTGAGGAGACGCCTGACCCTAAAGACACTGTTCTTTCAGAAATTTCTGCTGCTCCTAGTCCAGTGGAAACACCTCAACATGCTGCATGCAGACGCACCACAATGAGCGTCAGCAGGAAAATATCCACAGACTCGCTCTATTCCTCCTGT
Seq C2 exon
AAATCTACATCTTGGATCTCAGAGGAGGATTTCCACAAACCCGAAGACTTGAGTATTTCTGAAGCTTATGCCATCATTGACGTCACTCCGATGAACGGGCAGGTGTCTCCTGTGTGTGAAGCAGACGAGCTTCAGCCTCCTCCCAGTGTTGTGCACCGGAGACACAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099954-'5-6,'5-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.519 A=0.862 C2=0.316
Domain overlap (PFAM):
C1:
PF0275914=RUN=PD(62.4=38.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGGACTCCCGAATCGCTC
R:
CGTTCATCGGAGTGACGTCAA
Band lengths:
342-817
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]