BtaEX0027581 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020359 | PLEKHM1
Description
pleckstrin homology domain containing, family M (with RUN domain) member 1 [Source:HGNC Symbol;Acc:HGNC:29017]
Coordinates
chr19:45736706-45762134:-
Coord C1 exon
chr19:45761508-45762134
Coord A exon
chr19:45752760-45753165
Coord C2 exon
chr19:45736706-45736970
Length
406 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTTAAAAACTTCTAGGGT
3' ss Score
6.74
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
AAGGCCCGCCTGTGCGAGTACTACCAGCCCACGGCCCTGCTCCGCGACGCCGAGGAGGGCGAGTTCCTCCTGAGCTTCCTTCAGGGCCTGACGTCCCTATCCTTTGAGCTCTCCTACAAGTCTGCCATCCTTAACGAGTGGACGCTCACCCCGCTGGCCCTCTCGGGGCTCTGCCCGCTCTCAGAGCTCGACCCCCTCACTATCCCTGGAGCTCAACTGCAGCGGAAGGAGTCTCTGGACTCCATCTCCCATTCCTCGGGCTCAGAGGACATCGAGGTCCAGCACTCAGGCCACAAGATCCGACGGAACCGGCAGCTCACCGCCTCCTCCCTCAGCCTGGACACGGCCAGTTCATCCCAGCTCTCCTGCAGCCTCAACTCTGACAGCTGCCTCCTCCAAGAGAATGGCTCCAAGAGTCCAGACCGTTCCGAGGAGCCCATGTCCTATGACTCAGACCTGGGGATGGCCAATGCCGACGACTCGGACATGTCTCTGCAAGA
Seq A exon
GGTGTTGTCGGAATTCAGCAAAGCCCAGGTAAACTCTGTGCCAGCCAATGGACCGATCCGAGAAACGGAGGTTCCCACGCTGCAGGCCCCGCTCCCCTTCCCTGGCCTCAACACCAGCACGTCCCTGCACTCAGAGGAAACAGCAGAGCCCCGCCATGCCCAGGCCTCCCCTGGAACTGGAGATGGGGACCACAAGCGGGAGCCGCTTGCCCAGGCGCCCAGCCCCCTGGGCTGGCCGCAGCCGGGCCCTGCCCAAGCTGTCCTTTCGGGGAGTGCTTCAGGCCAGCAGCCTCCTTGTCCCGTGAGAGACGCCACCAGAGCAGCCAGCCAGGAAAGCGGCCAGCAGAAGCCCCCGGAGGATAGCGGACCTCGGCTCAGTCTTGCGGTTCCCTCCCCCACCAGTCCG
Seq C2 exon
AAAAGCAAGAGCTGGATCTCAGAAGATGACTTCTACCGGCCTCCCCGGGAACAGCCCAGACAGAGTCCTTCTGATGCCGCCACAGCTTCTCCCAGAGAGATTCCTGAGTCAAGGCCTGGCCTCCTCGTGCAAGAACCAAGACGAAGCTGCTCCATGGAGGCCTTAGACAAAGCTTGCGCACCTTCCCCAGGAAGCGGGAGAAACACGGCCGCCCTGCCACCGCCGGAACACAGGAACTTCAGGGTGGTGCATCGACGGCAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020359-'2-6,'2-2,3-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.271 A=1.000 C2=0.910
Domain overlap (PFAM):
C1:
PF0275914=RUN=PD(61.9=39.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCCCTGGAGCTCAACTGCA
R:
GGAGGCCGGTAGAAGTCATCT
Band lengths:
344-750
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development