GgaEX0000126 @ galGal4
Exon Skipping
Gene
ENSGALG00000000201 | PLEKHM1
Description
pleckstrin homology domain-containing family M member 1 [Source:RefSeq peptide;Acc:NP_001026095]
Coordinates
chr27:1590446-1596880:-
Coord C1 exon
chr27:1596257-1596880
Coord A exon
chr27:1595454-1595712
Coord C2 exon
chr27:1590446-1590591
Length
259 bp
Sequences
Splice sites
3' ss Seq
ACTGCTGCTTCTCTTCAAAGGGT
3' ss Score
9.21
5' ss Seq
CCGGTAGGT
5' ss Score
9.39
Exon sequences
Seq C1 exon
GAGCGCTCCCGCCTGCCCGAGTTCTACCAACCCACAGCGCTGCTCCTGGACGCCGAGGAGTGTGAATTCCTCCTGAGCTACCTGCAGGGCTTGTCGTCCCTCACCTTCCAGCTGTCCTACAAGTCGGCGGTGCTCAACGAGTGGACGGTCACCCCGCTGTCCCTCTCAGGGCTGTGCCCCGTATCCGAGCTGCTGGAGCCCCCGGCGGCCGAACCTCAAAGAAAAGCGTCTCTGGGTTCCATCTCCCAATCTTCGGGCTCTGATGAGATTGAAATCCAACCCCCGGCGCTGCCCATCTGCAAGGCGGGCGACAAACCCAAGCGGACGTCGTCCTCGCTGAGCCTGAACACCACGGGTTCGTCACAGCTGTCCTCCAGCCTGGGCTCTGACAGCGTGCAGCCCCACTGCGCCCGCAGCCCCGAGCGCGGCGATGAGCCGCTGTCCTGCGACTCCGACCTGGGCACGGCCACGGCCGAGGACCTGGACAGGTCATTGCAAGA
Seq A exon
GGTGCTCTCCGAGTTCAGGAAAGCTGAGCCGAGTTTCGGTGCCCCATCGGAGCAGCTCATCCCGGCCGTGCTGGGCTGCTCCCCGCCGCCCCCCGAGGACACCCACCCACCACCTTCCCCCCCACCAGCTGATGCCTGCGCTGCTCCCCAGGAGGAGGACAGCATCCCGACCCCACGGCGCGTGGATGGGGGGAAGGAGGGCCGCGTGGTGCGCAGCCCTGCTGCCAAATTCCTCTGCTCCCCGCTGCCGGGCTGCCCG
Seq C2 exon
GCTGCTCCAGGCAGATCGGCTTCTCCTTCGCCAAACCCAAACTCTGTGCCTACTCCGGGCTCTACTACTGCGACAGCTGCCACCGGGACGACGAGACGGTCATCCCCTCACGCCTCATCCACAACTGGGACCTGAGCAAGAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000201_MULTIEX1-1/5=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.392 A=0.839 C2=0.000
Domain overlap (PFAM):
C1:
PF0275914=RUN=PD(61.9=39.7)
A:
NO
C2:
PF139011=DUF4206=PU(17.2=71.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAATCTTCGGGCTCTGAT
R:
AGGCACAGAGTTTGGGTTTGG
Band lengths:
308-567
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]