GgaEX1044497 @ galGal4
Exon Skipping
Gene
ENSGALG00000000201 | PLEKHM1
Description
pleckstrin homology domain-containing family M member 1 [Source:RefSeq peptide;Acc:NP_001026095]
Coordinates
chr27:1590446-1593976:-
Coord C1 exon
chr27:1593742-1593976
Coord A exon
chr27:1592291-1593184
Coord C2 exon
chr27:1590446-1590591
Length
894 bp
Sequences
Splice sites
3' ss Seq
CCGCCCCCTTTTCCCCCAAGGTC
3' ss Score
9.31
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
Exon sequences
Seq C1 exon
AATAGGAAGAGTTGGATCTCAGAAGACGATTTCTACAGACCTTCAGCAGGGGAGAGCGATGAAATCCCAGCTGATCCCAACGGCTTTGTGCCGGATGGGGCTGGGGAGGGCCCGACCTCGGGGCTGCTCAGTGCTTTGGATTTGGAAAGGCCGTCCCCACCGCCCTCCCAGGGCCCCAGGCTGTCCCCCGAGCGAGAGCAGAAGGGCTTCAGCGTCGTGCATCGCCGGCAGATGG
Seq A exon
GTCTCTCCAACCCATTTCGGGGACTCCTGAAGCTGGGCAGCCTGGAGCGGCGCGGGGCCATGGGCATCTGGAAGGAGTTCTCCTGCGAGCTGTCGCCGCTGGAGCTCCGGCTCTTCCTGGACCACGAGGACCGCATCTGCGTGGAGAGCTTTTCCCTGCTGCGCTGCGAGTCGCTGGCGCTGACGCATTCGGATGGACGCTTCGAGCTGGTGTTCCTGGGGAAAAAGCTCTGCCTGAGGGCTCCTTCCCGGGACGAGGCTGAGGACTGGCTGGATCGGATCCGCGAGGCGCTGCGCAAGGTCCGCCCGCAGCTGGAGGAGGAGGAGTGGGAGACGCTGGAGTACCCCGAGGACGGTGGGGATGGCTGTGAGCCCTCTGCTCCGCTCCAGTATGAAGCACCTGGGAACGGCTTGGACTGGACTTTATCCCACAAAGCAGAGCTGGATGCCATCAAGGAGTCCATTCTGTACGCGGACGTAGATAAGACGTGGGTCCCTTTTATATTTTCCCTCTCACTGGAAACCTTGAAGTGCTTTAAAGTGCGGAACAACGACAAAATCTTGAGCAACAGCTATGGCATAGAGACGATCCAGGACATCCTCCCCGACACCAGCCTGGGGGGACCCTCCTTCTTCAAGGTGATCACCTCCAAAGCTGTGCTGAAACTGCGGGCCGAGAGCGCGCAGGAGGCTGCGGCATGGAGGGAGCTGGTGCGAGCGGTGCTGGGCTCCTACCTGGAGGGAGCCGAGGAGGCACTGACCCTGGGGGGCGGCTTGGACGGCCATTCCCAGGTGCTGCTGAAGAGCATGGTGAAGGAGAACGGCTTCTTGTTGCAGTACCTGGTGGCCATCCCCGTGGAGAAGGGGCTGGACTCGCAGAGCTTCATCTGCGCAG
Seq C2 exon
GCTGCTCCAGGCAGATCGGCTTCTCCTTCGCCAAACCCAAACTCTGTGCCTACTCCGGGCTCTACTACTGCGACAGCTGCCACCGGGACGACGAGACGGTCATCCCCTCACGCCTCATCCACAACTGGGACCTGAGCAAGAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000201_MULTIEX1-3/5=2-4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.848 A=0.047 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF139011=DUF4206=PU(17.2=71.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGATTTCTACAGACCTTCAGCA
R:
CTTGCTCAGGTCCCAGTTGTG
Band lengths:
350-1244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]