BtaEX0027582 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020359 | PLEKHM1
Description
pleckstrin homology domain containing, family M (with RUN domain) member 1 [Source:HGNC Symbol;Acc:HGNC:29017]
Coordinates
chr19:45729719-45736970:-
Coord C1 exon
chr19:45736706-45736970
Coord A exon
chr19:45732301-45733221
Coord C2 exon
chr19:45729719-45729864
Length
921 bp
Sequences
Splice sites
3' ss Seq
GCGCCTCTTTCTGCCTGCAGGGC
3' ss Score
10.89
5' ss Seq
CAGGTGCTG
5' ss Score
4.87
Exon sequences
Seq C1 exon
AAAAGCAAGAGCTGGATCTCAGAAGATGACTTCTACCGGCCTCCCCGGGAACAGCCCAGACAGAGTCCTTCTGATGCCGCCACAGCTTCTCCCAGAGAGATTCCTGAGTCAAGGCCTGGCCTCCTCGTGCAAGAACCAAGACGAAGCTGCTCCATGGAGGCCTTAGACAAAGCTTGCGCACCTTCCCCAGGAAGCGGGAGAAACACGGCCGCCCTGCCACCGCCGGAACACAGGAACTTCAGGGTGGTGCATCGACGGCAGATGG
Seq A exon
GGCTGTCCAACCCATTCCGGGGGCTCCTGAAGCTGGGCACGGTGGAGCGGCGGGGGGCCATGGGAATCTGGAAGGAATTCTTCTGCGAGCTCTCCCCACTGGAGTTGCGCCTCTTCCTGAGCGGCAAGGAGCGCACCTGCGTGGAGACCTGCTCACTGCTGCGCTGCGAGTCCGTGGGGCCGGCCCACAGCGACGGCCGCTTCGAGCTGCTCTTCTCTGGCAAGAAGCTGACCCTGCGCACCTCGTCCCGGGATGAAGCCGAGGACTGGCTGGACCGGGTGCGCGAGGTGCTGCAGAAGTGCCGGCCCCTACAGGAGGACGACTGGGTGACCATCCAGTACCCAGAGGAGCCCGAGGACCCCCCAGAGGTCCCCCAGGGTGGCCACCCCGCCCCCTCAGACCTGCACATAGAGGCTGAAACCCCCCAGGGCCCGCAGTTCAACTGGTCCTTCTCCCAGGTGCCTGAGCCCGACGCTATCAAAGAGTCCCTTCTCTACCTGTACACGGACCGCACGTGGACGCCCTACATCTTCTCCCTGTCCTTGGAGTCCCTCAAGTGCTTCCGCGTGAGAAACAACGAGAAGATGTTAAGTGACAGCCACGGAGTCGAGACCATCCGCGATATCCTGCCGGACACGAGCCTCGGGGGCCCAGCCTTCTTCAAAATCATTACGGCCAAGGCCATCCTGAAGCTGCAGGCCGGGAATGCCGAGGAGGCTGCCCTGTGGAGGGACATGCTACGCAAGGTCCTGGCGTCCTACCTGGAGACGGCCGAGGAGGCGGTGACCCTCGGTGGCAGTCTGGATGAAAGCTGTCAGGAGGTGCTGAAGTTTGCCACGCGGGAGAACGGCTTCCTGTTGCAGTACCTGGTGGCCATCCCCACAGAGAAAGGCCTCGACTCCCAGGGCTGCTTCTGTGCAG
Seq C2 exon
GCTGCTCCCGGCAGATCGGCTTCTCATTTGTGCGACCCAAGCTCTGTGCCTTCTCTGGCCTCTATTACTGTGACATCTGCCATCAAGACGATGTCTCAGTGATCCCGGCCAGGATCATCCACAACTGGGACCTCACCAAGCGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020359-'5-8,'5-7,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.910 A=0.114 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF139011=DUF4206=PU(16.7=71.4)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGCCCAGACAGAGTCCTT
R:
CAGTTGTGGATGATCCTGGCC
Band lengths:
343-1264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development