Special

BtaEX0027582 @ bosTau6

Exon Skipping

Gene
Description
pleckstrin homology domain containing, family M (with RUN domain) member 1 [Source:HGNC Symbol;Acc:HGNC:29017]
Coordinates
chr19:45729719-45736970:-
Coord C1 exon
chr19:45736706-45736970
Coord A exon
chr19:45732301-45733221
Coord C2 exon
chr19:45729719-45729864
Length
921 bp
Sequences
Splice sites
3' ss Seq
GCGCCTCTTTCTGCCTGCAGGGC
3' ss Score
10.89
5' ss Seq
CAGGTGCTG
5' ss Score
4.87
Exon sequences
Seq C1 exon
AAAAGCAAGAGCTGGATCTCAGAAGATGACTTCTACCGGCCTCCCCGGGAACAGCCCAGACAGAGTCCTTCTGATGCCGCCACAGCTTCTCCCAGAGAGATTCCTGAGTCAAGGCCTGGCCTCCTCGTGCAAGAACCAAGACGAAGCTGCTCCATGGAGGCCTTAGACAAAGCTTGCGCACCTTCCCCAGGAAGCGGGAGAAACACGGCCGCCCTGCCACCGCCGGAACACAGGAACTTCAGGGTGGTGCATCGACGGCAGATGG
Seq A exon
GGCTGTCCAACCCATTCCGGGGGCTCCTGAAGCTGGGCACGGTGGAGCGGCGGGGGGCCATGGGAATCTGGAAGGAATTCTTCTGCGAGCTCTCCCCACTGGAGTTGCGCCTCTTCCTGAGCGGCAAGGAGCGCACCTGCGTGGAGACCTGCTCACTGCTGCGCTGCGAGTCCGTGGGGCCGGCCCACAGCGACGGCCGCTTCGAGCTGCTCTTCTCTGGCAAGAAGCTGACCCTGCGCACCTCGTCCCGGGATGAAGCCGAGGACTGGCTGGACCGGGTGCGCGAGGTGCTGCAGAAGTGCCGGCCCCTACAGGAGGACGACTGGGTGACCATCCAGTACCCAGAGGAGCCCGAGGACCCCCCAGAGGTCCCCCAGGGTGGCCACCCCGCCCCCTCAGACCTGCACATAGAGGCTGAAACCCCCCAGGGCCCGCAGTTCAACTGGTCCTTCTCCCAGGTGCCTGAGCCCGACGCTATCAAAGAGTCCCTTCTCTACCTGTACACGGACCGCACGTGGACGCCCTACATCTTCTCCCTGTCCTTGGAGTCCCTCAAGTGCTTCCGCGTGAGAAACAACGAGAAGATGTTAAGTGACAGCCACGGAGTCGAGACCATCCGCGATATCCTGCCGGACACGAGCCTCGGGGGCCCAGCCTTCTTCAAAATCATTACGGCCAAGGCCATCCTGAAGCTGCAGGCCGGGAATGCCGAGGAGGCTGCCCTGTGGAGGGACATGCTACGCAAGGTCCTGGCGTCCTACCTGGAGACGGCCGAGGAGGCGGTGACCCTCGGTGGCAGTCTGGATGAAAGCTGTCAGGAGGTGCTGAAGTTTGCCACGCGGGAGAACGGCTTCCTGTTGCAGTACCTGGTGGCCATCCCCACAGAGAAAGGCCTCGACTCCCAGGGCTGCTTCTGTGCAG
Seq C2 exon
GCTGCTCCCGGCAGATCGGCTTCTCATTTGTGCGACCCAAGCTCTGTGCCTTCTCTGGCCTCTATTACTGTGACATCTGCCATCAAGACGATGTCTCAGTGATCCCGGCCAGGATCATCCACAACTGGGACCTCACCAAGCGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020359-'5-8,'5-7,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.910 A=0.114 C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
PF139011=DUF4206=PU(16.7=71.4)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
ALTERNATIVE
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGCCCAGACAGAGTCCTT
R:
CAGTTGTGGATGATCCTGGCC
Band lengths:
343-1264
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development