MmuEX0035804 @ mm10
Exon Skipping
Gene
ENSMUSG00000034247 | Plekhm1
Description
pleckstrin homology domain containing, family M (with RUN domain) member 1 [Source:MGI Symbol;Acc:MGI:2443207]
Coordinates
chr11:103373940-103380352:-
Coord C1 exon
chr11:103380034-103380352
Coord A exon
chr11:103376593-103377513
Coord C2 exon
chr11:103373940-103374085
Length
921 bp
Sequences
Splice sites
3' ss Seq
TGCCTCTTTTCTCCCACTAGGGC
3' ss Score
11.78
5' ss Seq
CAGGTGCTG
5' ss Score
4.87
Exon sequences
Seq C1 exon
AAAGGCAAGAGCTGGATTTCTGAAGATGACTTCTGCCGACCTCCCCAGGAGCCTGCTCTAAAGAGCGCTGCAGGTCTCTGCACATCTCCTGTGCAAGACACTCCAGAGTCAAGGGCTGCTCTCCACGGGCCTTTTTCTCAAGGACCAAGAAAGAGCTGTTCCTTGGGGGCATTAGACAAAGCATGTGTGCCCTCACAGGCCTGTGGAAATGCCCAGCCAGCTCCAGCCCCAGCTCCAGCTCCAGCCCCAGCCCCAGCCCCAGCTCCAGGGGTGACACAAGACCATAAAAACTTCTGTGTGGTGCACCGAAGGCAAATGG
Seq A exon
GGCTGTCCAACCCATTCCGGGGCCTCATGAAGCTGGGCACAGTGGCCCGGCGAGGAGCCATGGGCATCTGGAAGGAATTCTTTTGTGAGCTGTCCCCGTTGGAGTTCCGCCTCTACTTGAGTGATGAGGAACGCACCTGTGTGGAGAGCTGCTCCCTGCTCCGATGTGAGGCTGTGGGGCCAGCACACAGTGATGGACGTTTTGAGTTGGTCTTCTCGGGCAAGAAGCTGGCTCTCCGTGCCTCCTCCCAAGACGAGGCTGAGGACTGGCTTGACCGCGTACGGGAGGCTCTGCAGAAGGTGCGCCCTCAGCAGGAAGATGAGTGGGTGAATATCCAGTACCCAGACCAGGCTGAGGATGCCCCAGAGGCTCCACCAGACAGCCTCCCCCCCTATTCAACTCTACTCCCCGAGCCTGCGGGTGCCCAGGGCATGCAGTTGGACTGGACATCTGCCCAGGTTCCAGAACCAGATGCTATCAAAGAGTCCCTTTTGTATCTGTATGCAGACCGGACCTGGGTCCCCTATATCTTTTCCCTGTCCTTGGAGTCTCTGAAATGTTTCCGAGTGAGAAACAATGAGAAGATGCTAAGTGATAGCCATGGAGTGGAGACCATCCGAGACATCCTGCCAGACACCAGCCTTGGGGGCCCAGCCTTCTTCAAAATCATCACGGCCAAGGCCGTCCTGAAACTGCAGGCCAAAAACACCGAGGAGGCCACCCACTGGAGAGACCTGGTCCGGAAAGTGCTGGCATCTTACCTAGAGTCAGCTGAGGAGGCTGTGACACTTGGTGGGAGTCTGGATGAAAAATGTCAGGAGGTGCTGAAGTTTGCTACCAGGGAGAACGGCTTCCTGCTACAGTACCTTGTGGCCATCCCGACCGAGAAGGGCCTCGACTCCCAGGGCTGCTTCTGCGCAG
Seq C2 exon
GCTGCTCCCGACAGATCGGCTTCTCCTTTGTACGACCCAAGCTCTGTGCCTTCTCTGGCCTGTATTACTGTGACTTCTGCCACCAAGACGATGCCTCAGTGATTCCAGCCAGAATCATCCACAACTGGGACCTCACGAAGCGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034247_MULTIEX1-3/3=2-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.606 A=0.114 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF139011=DUF4206=PU(17.1=71.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAAAGAGCGCTGCAGGTCTC
R:
CATCGTCTTGGTGGCAGAAGT
Band lengths:
355-1276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types