MmuEX0035804 @ mm9
Exon Skipping
Gene
ENSMUSG00000034247 | Plekhm1
Description
pleckstrin homology domain containing, family M (with RUN domain) member 1 [Source:MGI Symbol;Acc:MGI:2443207]
Coordinates
chr11:103235254-103241666:-
Coord C1 exon
chr11:103241348-103241666
Coord A exon
chr11:103237907-103238827
Coord C2 exon
chr11:103235254-103235399
Length
921 bp
Sequences
Splice sites
3' ss Seq
TGCCTCTTTTCTCCCACTAGGGC
3' ss Score
11.78
5' ss Seq
CAGGTGCTG
5' ss Score
4.87
Exon sequences
Seq C1 exon
AAAGGCAAGAGCTGGATTTCTGAAGATGACTTCTGCCGACCTCCCCAGGAGCCTGCTCTAAAGAGCGCTGCAGGTCTCTGCACATCTCCTGTGCAAGACACTCCAGAGTCAAGGGCTGCTCTCCACGGGCCTTTTTCTCAAGGACCAAGAAAGAGCTGTTCCTTGGGGGCATTAGACAAAGCATGTGTGCCCTCACAGGCCTGTGGAAATGCCCAGCCAGCTCCAGCCCCAGCTCCAGCTCCAGCCCCAGCCCCAGCCCCAGCTCCAGGGGTGACACAAGACCATAAAAACTTCTGTGTGGTGCACCGAAGGCAAATGG
Seq A exon
GGCTGTCCAACCCATTCCGGGGCCTCATGAAGCTGGGCACAGTGGCCCGGCGAGGAGCCATGGGCATCTGGAAGGAATTCTTTTGTGAGCTGTCCCCGTTGGAGTTCCGCCTCTACTTGAGTGATGAGGAACGCACCTGTGTGGAGAGCTGCTCCCTGCTCCGATGTGAGGCTGTGGGGCCAGCACACAGTGATGGACGTTTTGAGTTGGTCTTCTCGGGCAAGAAGCTGGCTCTCCGTGCCTCCTCCCAAGACGAGGCTGAGGACTGGCTTGACCGCGTACGGGAGGCTCTGCAGAAGGTGCGCCCTCAGCAGGAAGATGAGTGGGTGAATATCCAGTACCCAGACCAGGCTGAGGATGCCCCAGAGGCTCCACCAGACAGCCTCCCCCCCTATTCAACTCTACTCCCCGAGCCTGCGGGTGCCCAGGGCATGCAGTTGGACTGGACATCTGCCCAGGTTCCAGAACCAGATGCTATCAAAGAGTCCCTTTTGTATCTGTATGCAGACCGGACCTGGGTCCCCTATATCTTTTCCCTGTCCTTGGAGTCTCTGAAATGTTTCCGAGTGAGAAACAATGAGAAGATGCTAAGTGATAGCCATGGAGTGGAGACCATCCGAGACATCCTGCCAGACACCAGCCTTGGGGGCCCAGCCTTCTTCAAAATCATCACGGCCAAGGCCGTCCTGAAACTGCAGGCCAAAAACACCGAGGAGGCCACCCACTGGAGAGACCTGGTCCGGAAAGTGCTGGCATCTTACCTAGAGTCAGCTGAGGAGGCTGTGACACTTGGTGGGAGTCTGGATGAAAAATGTCAGGAGGTGCTGAAGTTTGCTACCAGGGAGAACGGCTTCCTGCTACAGTACCTTGTGGCCATCCCGACCGAGAAGGGCCTCGACTCCCAGGGCTGCTTCTGCGCAG
Seq C2 exon
GCTGCTCCCGACAGATCGGCTTCTCCTTTGTACGACCCAAGCTCTGTGCCTTCTCTGGCCTGTATTACTGTGACTTCTGCCACCAAGACGATGCCTCAGTGATTCCAGCCAGAATCATCCACAACTGGGACCTCACGAAGCGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034247-'8-11,'8-10,9-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.589 A=0.114 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF139011=DUF4206=PU(17.1=71.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAAAGAGCGCTGCAGGTCTC
R:
CATCGTCTTGGTGGCAGAAGT
Band lengths:
355-1276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: