RnoEX0067110 @ rn6
Exon Skipping
Gene
ENSRNOG00000028521 | Plekhm1
Description
pleckstrin homology and RUN domain containing M1 [Source:RGD Symbol;Acc:1308010]
Coordinates
chr10:91462143-91468845:-
Coord C1 exon
chr10:91468563-91468845
Coord A exon
chr10:91465417-91465715
Coord C2 exon
chr10:91462143-91462288
Length
299 bp
Sequences
Splice sites
3' ss Seq
TGCCTTTTTTCTTCCACTAGGGC
3' ss Score
11.11
5' ss Seq
AAGGTGCGC
5' ss Score
9.05
Exon sequences
Seq C1 exon
AAAGGCAAGAGCTGGATTTCTGAAGATGACTTCTGCCGACCTCCCAAGGAGCATGCTCTGAAGAACACTTCAGATCTTTGCATATCTCCTCTGCAAGGGACTCCAGAGTTGAGGACTGCTCTCCACGGGCCGTTTTCTCAAGGACCAAGAAAGAGCTGCTCCCTGGGGGCCTTAGACAAAGCGTGTGTGTCCTCGCTGGACTACAGAAATGCCCAGACAGCTCCATCTCCAGCGGTGACACAAGACCATAAAAACTTCTGTGTGGTGCATCGAAGGCAGATGG
Seq A exon
GGCTCTCTAACCCATTCCGGGGCCTCATGAAGCTGGGCACAGTAGCCCGGCGAGGAGCCATGGGCATCTGGAAGGAATTCTTTTGTGAGCTGTCCCCACTGGAGCTCCGCCTCTACCTGAGTGACGAGGAGCGCACCTGTGTGGAGAGCTGCTCCCTGCTACGGTGTGAGGCCGTGGGACCAGCACACAGCGATGGACGTTTTGAGTTGGTCTTCTCCGGCAAGAAGCTGGCTCTCCGTGCCTCCTCCCAGGACGAGGCTGAGGACTGGCTTGACCGTGTGCGGGAGGCTCTGCAGAAG
Seq C2 exon
GTTGCTCCCGGCAGATCGGCTTCTCCTTTGTACGACCTAAGCTCTGTGCCTTCTCTGGCCTATATTACTGTGACTTCTGCCACCAAGACGATGCCTCGGTGATTCCAGCCAGAATCATTCATAACTGGGACCTCACAAAGCGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028521_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.316 A=0.114 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF139011=DUF4206=PU(17.1=71.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAGGAGCATGCTCTGAAG
R:
GAAGGCACAGAGCTTAGGTCG
Band lengths:
294-593
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]