DreEX0056309 @ danRer10
Exon Skipping
Gene
ENSDARG00000099954 | plekhm1
Description
pleckstrin homology domain containing, family M (with RUN domain) member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2752]
Coordinates
chr12:4911846-4917830:+
Coord C1 exon
chr12:4911846-4912014
Coord A exon
chr12:4914855-4915775
Coord C2 exon
chr12:4917685-4917830
Length
921 bp
Sequences
Splice sites
3' ss Seq
TGTGTCTCTGTCTTCGTCAGGTC
3' ss Score
10.62
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
AAATCTACATCTTGGATCTCAGAGGAGGATTTCCACAAACCCGAAGACTTGAGTATTTCTGAAGCTTATGCCATCATTGACGTCACTCCGATGAACGGGCAGGTGTCTCCTGTGTGTGAAGCAGACGAGCTTCAGCCTCCTCCCAGTGTTGTGCACCGGAGACACAACG
Seq A exon
GTCTTCCTAACCCATTCAGAGGTTTGCTAAAGCTGGGTCAGCTGGAGCGACGCAGCGCGGTGGGTATGTGGTGGGATTATTACTGCGAGCTCTCGCCATTTGAGCTGCGCCTTTACGTCAATGCAGAGGAGCGCGTCTGCAACGAAAACCTGTCCCTGCTGCGCTGCGAGGACATCCACCTGTACTCCAGCACCGAGGGCCGATTTCGGCTCACCTTCCCTAACAAAAGAATCTACCTGCGTGCGCCATCTAAAGGAGAAGCGGAGGACTGGGTGGACCGAATCACAGAGGCTGTCAACAAACTACGGCCCATTATGAGAGATGAACAGTGGGAGGTGCTGCACACGTCCAGCGATCAAGAAGTCACATCTCCAGCTCCATCAACACCTGAGCACACCATCTCTGAGCTTCCAGATCCTCCACAGTTAGATTGGACTCGGCATAAAGACCCAGAACCAGACGCCATAAAGGAGGCGGTGGTCTATCAGAGCTTGGAGGAGAAGGGCTGGCGGTGTCTGGTGCTCTCACTCTCTCTCGAGATCCTCAGAGGTTTCCAGGTCCGAGAAGACTCAAAGACACCACTTTTCTCACTCCCCATTGGGAGCATCCGGGATGTGGTTCCTGATGTTTCTCTGGGCAGTCCTGCGTTTTTTAAGGTTTTGACAGTGCGGGACACGCTGACGCTGAGGGCGGAGAGCGGTGAGGAGGCACGAGGGTGGAGGAGTCTGATCAGAGGAGCGCTGGACTCCTATCTGGAGACGGAGGATGATGGAGCGGGAGCCTCAGCTGCTGACGGTGCACAAGGAGGAGTCGTCCACAAGCTTGTCCAACACAGACTGAAGGGAGACGGAGAGCTGCTGTTACACCTGTCTGTTGTGCCCATCGAGAGAGGACTGGACGCACAGAATTACAGATGTGCAG
Seq C2 exon
GTTGCTCTCGTCAGATCGGTGTGTCTCTGGGCAGAGGCAGACTGTGTGAGTTCTCCGGTCAGCAGTTCTGTGATTCCTGCCATCAAGGAGACATGAGCATCATCCCCTCCCGCATGCTGCACAACTGGGACCTGAAAACTCGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099954-'7-9,'7-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.316 A=0.140 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0016924=PH=WD(100=29.9)
C2:
PF139011=DUF4206=PU(17.2=71.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACATCTTGGATCTCAGAGGAGGA
R:
CTCGCGAGTTTTCAGGTCCC
Band lengths:
310-1231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]