GgaEX0000237 @ galGal3
Exon Skipping
Gene
ENSGALG00000000307 | E1C668_CHICK
Description
NA
Coordinates
chr28:70375-71419:-
Coord C1 exon
chr28:71291-71419
Coord A exon
chr28:70917-71023
Coord C2 exon
chr28:70375-70531
Length
107 bp
Sequences
Splice sites
3' ss Seq
ATTGTTCTTTCTCCTTCCAGCCA
3' ss Score
10.01
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
GACTTCAAGGAGCAGATAGTCCATCATGCTGCAACCATCTTCCTGATCAGTTTCTCATACTGTGCCAATTACATCCGGATTGGGACACTGGTGATGGTGATTCATGATGCTTCTGATTGCTTCCTAGAG
Seq A exon
CCAACTAAGATATTCAATTACATGAAGTGGAAAAAAACTTGTGACAGCCTCTTTATGATCTTCTCAGCTGTTTTCCTCATCAGCCGCCTGGTCGTTTTCCCCTACAC
Seq C2 exon
AGTGCTCTATAACACCTACTACTACTCCATGGAGATATTCCAGCCCTTCTTTGGATACTACTTTGTGAATGCTCTCCTGATAACTCTACAGTTGCTTCACGTCTTCTGGTCCTGCCTCATTATTCATATGGTCTACAAGTTCATGCTCCAGGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000307-'12-11,'12-10,13-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(21.6=100)
A:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
C2:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCAACCATCTTCCTGAT
R:
GCCCTGGAGCATGAACTTGTA
Band lengths:
257-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]