GgaEX0000953 @ galGal3
Exon Skipping
Gene
ENSGALG00000000936 | F1NDZ5_CHICK
Description
NA
Coordinates
chr17:10876227-10877844:+
Coord C1 exon
chr17:10876227-10876304
Coord A exon
chr17:10876707-10876773
Coord C2 exon
chr17:10877683-10877844
Length
67 bp
Sequences
Splice sites
3' ss Seq
TGTTCTTCTCTTTTACTCAGATG
3' ss Score
9.31
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTCAGAGAAACTCTAGCAGCTGAAACAGGACTCAGTGTGCGAGTTGTCCAGGTTTGGTTTCAAAACCAAAGAGCAAAG
Seq A exon
ATGAAAAAACTAGCACGAAGGCACCAGCAGCAGCAGGAGCAACAAAATTCTCAGCGACTAGGGCAAG
Seq C2 exon
AAGTAATGTCTAACCGAATGGAAGGAATGATGACATCTTACACACCACTTGCACCACCGCAGCAGCAGATTGTAGCAATGGATCAAAGCAGTTATGGCACAGACCCATTTCAGCAGGGTCTGACCCCTCCACAAATGCCAGGCGACCACATGAACCCTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000936_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=FE(43.9=100)
A:
PF0004624=Homeobox=PD(3.5=8.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAACAGGACTCAGTGTGCG
R:
GTCAGACCCTGCTGAAATGGG
Band lengths:
182-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]