DreEX6050760 @ danRer10
Exon Skipping
Gene
ENSDARG00000068365 | lmx1bb
Description
LIM homeobox transcription factor 1, beta b [Source:ZFIN;Acc:ZDB-GENE-050114-2]
Coordinates
chr8:33257804-33269392:-
Coord C1 exon
chr8:33269315-33269392
Coord A exon
chr8:33268777-33268843
Coord C2 exon
chr8:33257804-33257962
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTTTATCGTTATTTTTTCAGATG
3' ss Score
10.07
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTAAGAGAGACACTGGCTGCAGAGACAGGTCTGAGCGTACGCGTGGTTCAAGTGTGGTTCCAGAACCAAAGAGCTAAG
Seq A exon
ATGAAGAAGTTGGCGCGGAGACAGCAGCAGCAACAGGAGCAGCAGAACTCCCAAAGGCTGGGCCAAG
Seq C2 exon
AGGTAATGTCCAATCGGATGGAGGGTATGATGAACTCCTACACACCATTGGCTCCAGCCCAGCAGCAAATGGTTGCACTGGAGAACGGCTACAGCACCGACCCCTTCCAGCAGGGCCTCACCCCTCCTCAGATGCCCGGTGACCACATGAACCCATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068365-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=1.000 C2=0.944
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=FE(43.9=100)
A:
PF0004624=Homeobox=PD(3.5=8.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGAGACACTGGCTGCAGA
R:
GTAGCCGTTCTCCAGTGCAAC
Band lengths:
168-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]