BtaEX6046180 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010228 | LMX1B
Description
LIM homeobox transcription factor 1, beta [Source:HGNC Symbol;Acc:HGNC:6654]
Coordinates
chr11:97478014-97480659:+
Coord C1 exon
chr11:97478014-97478091
Coord A exon
chr11:97478224-97478290
Coord C2 exon
chr11:97480495-97480659
Length
67 bp
Sequences
Splice sites
3' ss Seq
ATGCACCGTATCTCCTGCAGATG
3' ss Score
9.75
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTCCGAGAGACGCTGGCGGCGGAGACGGGCCTCAGCGTGCGTGTGGTCCAGGTCTGGTTTCAGAACCAAAGAGCAAAG
Seq A exon
ATGAAGAAGTTGGCACGGCGGCATCAGCAGCAACAGGAGCAGCAGAACTCCCAGCGGCTGGGCCAAG
Seq C2 exon
AGGTCCTGTCCAGTCGCATGGAGGGCATGATGGCCTCCTACACGCCGCTGGCCCCGCCACAGCAGCAGATCGTGGCCATGGAGCAGAGTCCCTACGGCAGCAGCGACCCCTTCCAGCAGGGCCTCACGCCACCCCAAATGCCAGGTGACCACATGAACCCCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010228-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=1.000 C2=0.982
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=FE(43.9=100)
A:
PF0004624=Homeobox=PD(3.5=8.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGTGTGGTCCAGGTCT
R:
CATTTGGGGTGGCGTGAGG
Band lengths:
181-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]